MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA Brain:79.3 nTPM
GTEx:51.3 nTPM
FANTOM5:122.9 Scaled Tags Per Million
Pig:34.2 nTPM
Mouse:7.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 79.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.7
1830 Male, age 51, unknown 78.4
2019 Male, age 18, unknown 77.2
1833 Male, age 53, unknown 72.1
2666 Male, age 74, left hemisphere 72.1
1870 Female, age 42, unknown 68.9
2586 Male, age 75, left hemisphere 66.7
2411 Female, age 72, unknown 65.9
2828 Female, age 72, unknown 63.1
1827 Male, age 72, unknown 48.6
2219 Male, age 76, both hemispheres 43.7
Dorsal raphe nucleus
nTPM: 48.0
2750 Male, age 76, both hemispheres 69.8
1828 Male, age 53, unknown 50.3
2016 Female, age 72, unknown 48.6
2047 Male, age 72, unknown 39.3
2298 Female, age 72, unknown 32.1
Inferior colliculus
nTPM: 46.2
1890 Male, age 53, unknown 54.0
2849 Male, age 72, unknown 47.4
1848 Female, age 42, unknown 46.1
2097 Female, age 72, unknown 37.2
Median raphe nucleus
nTPM: 56.1
2220 Male, age 76, midline 56.1
Periaquaductal grey, anterior
nTPM: 43.9
1795 Male, age 51, unknown 44.1
1947 Male, age 18, unknown 43.9
2502 Female, age 75, unknown 43.6
Periaquaductal grey, dorsal
nTPM: 41.0
2464 Female, age 72, unknown 50.7
1831 Male, age 72, unknown 46.9
2850 Male, age 76, both hemispheres 37.3
1840 Male, age 53, unknown 29.0
Periaquaductal grey, lateral
nTPM: 49.0
2272 Male, age 74, both hemispheres 56.3
2053 Male, age 18, unknown 48.1
2140 Male, age 76, both hemispheres 42.8
Pretectal area
nTPM: 46.7
2407 Male, age 75, both hemispheres 66.6
2316 Male, age 76, right hemisphere 65.5
1815 Male, age 53, unknown 51.8
2825 Male, age 18, unknown 48.6
2007 Male, age 72, unknown 46.8
1817 Female, age 42, unknown 46.3
2273 Male, age 74, both hemispheres 41.5
2667 Female, age 75, unknown 41.4
2224 Female, age 72, unknown 38.4
1944 Female, age 72, unknown 35.2
1816 Male, age 51, unknown 31.3
Red nucleus
nTPM: 79.3
1865 Male, age 51, unknown 91.4
2769 Male, age 72, unknown 90.4
1904 Male, age 53, unknown 90.0
2227 Male, age 72, unknown 88.4
2823 Male, age 76, right hemisphere 86.1
2785 Male, age 18, unknown 81.8
2584 Male, age 75, left hemisphere 80.0
2588 Male, age 74, left hemisphere 74.9
2503 Female, age 72, unknown 73.3
1821 Female, age 72, unknown 69.3
1954 Female, age 42, unknown 63.8
2725 Female, age 75, unknown 62.2
Substantia nigra
nTPM: 57.1
2590 Female, age 75, unknown 81.6
2583 Male, age 75, right hemisphere 79.0
2409 Female, age 72, unknown 63.8
2699 Male, age 18, unknown 61.3
2665 Male, age 74, both hemispheres 61.0
1851 Male, age 51, unknown 56.0
1941 Male, age 53, unknown 44.2
1889 Female, age 72, unknown 43.1
2241 Male, age 72, unknown 40.9
1916 Female, age 42, unknown 40.3
Superior colliculus
nTPM: 57.8
1913 Female, age 42, unknown 91.2
1995 Male, age 72, unknown 74.3
1839 Male, age 51, unknown 59.2
2664 Male, age 75, both hemispheres 57.6
2587 Male, age 74, left hemisphere 56.8
2668 Female, age 75, unknown 53.3
1895 Male, age 76, right hemisphere 52.0
1796 Male, age 53, unknown 50.0
2087 Female, age 72, unknown 44.8
2261 Male, age 18, unknown 38.7
Ventral tegmental area
nTPM: 56.7
2223 Female, age 72, unknown 74.8
2021 Male, age 53, unknown 58.8
2410 Female, age 72, unknown 54.1
1942 Male, age 51, unknown 53.8
2218 Male, age 76, both hemispheres 52.6
1915 Female, age 42, unknown 46.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 51.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.3
Samples: 139

Max nTPM: 166.5
Min nTPM: 16.3
Std nTPM: 22.5
Median nTPM: 48.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 166.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 142.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 131.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 115.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 106.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 97.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 94.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 83.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 81.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 77.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 77.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 122.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.9
FF:10158-103A5 76 years, female 122.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 44.2
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 31.4
Sample C Male 31.1
Sample D Male 44.2
Midbrain
nTPM: 33.5
Samples: 4

Max nTPM: 58.8
Min nTPM: 21.0
Sample A Female 58.8
Sample B Female 28.7
Sample C Male 25.6
Sample D Male 21.0
Periaqueductal gray
nTPM: 24.4
Samples: 3

Max nTPM: 25.7
Min nTPM: 22.7
Sample B Female 25.7
Sample C Male 24.8
Sample D Male 22.7
Superior colliculi
nTPM: 24.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 19.1
Sample A Female 26.0
Sample B Female 19.1
Sample C Male 25.2
Sample D Male 28.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.5
Sample A Male 7.1
Sample B Male 6.5
Sample C Female 7.0
Sample D Female 7.5

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