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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WASHC2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
37.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
29.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.8
957
Tumor
0.7
537
Tumor
0.7
715
Tumor
0.6
231
Tumor
0.6
861
Tumor
0.6
981
Tumor
0.6
925
Tumor
0.6
685
Tumor
0.6
477
Tumor
0.6
123
Tumor
0.6
911
Tumor
0.5
471
Tumor
0.5
953
Tumor
0.5
567
Tumor
0.5
211
Tumor
0.5
473
Tumor
0.5
553
Tumor
0.5
1041
Tumor
0.5
395
Tumor
0.5
951
Tumor
0.4
557
Tumor
0.4
867
Tumor
0.4
883
Tumor
0.4
451
Tumor
0.4
525
Tumor
0.4
724
Normal
0.4
487
Tumor
0.4
937
Tumor
0.4
171
Tumor
0.4
497
Tumor
0.4
493
Tumor
0.4
851
Tumor
0.4
921
Tumor
0.4
967
Tumor
0.4
387
Tumor
0.4
443
Tumor
0.3
745
Tumor
0.3
785
Tumor
0.3
425
Tumor
0.3
545
Tumor
0.3
1031
Tumor
0.3
1013
Tumor
0.3
311
Tumor
0.3
1015
Tumor
0.3
113
Tumor
0.3
665
Tumor
0.3
915
Tumor
0.3
257
Tumor
0.3
865
Tumor
0.3
881
Tumor
0.3
1025
Tumor
0.3
696
Normal
0.3
498
Normal
0.3
815
Tumor
0.2
714
Normal
0.2
536
Normal
0.2
267
Tumor
0.2
415
Tumor
0.2
283
Tumor
0.2
483
Tumor
0.2
461
Tumor
0.2
695
Tumor
0.2
984
Normal
0.2
554
Normal
0.2
913
Tumor
0.2
137
Tumor
0.2
355
Tumor
0.2
924
Normal
0.2
873
Tumor
0.2
524
Normal
0.2
918
Normal
0.2
977
Tumor
0.2
686
Normal
0.2
161
Tumor
0.2
954
Normal
0.2
131
Tumor
0.2
716
Normal
0.2
435
Tumor
0.2
823
Tumor
0.2
786
Normal
0.2
147
Tumor
0.1
375
Tumor
0.1
756
Normal
0.1
944
Normal
0.1
484
Normal
0.1
563
Tumor
0.1
778
Normal
0.1
488
Normal
0.1
478
Normal
0.1
516
Normal
0.1
697
Tumor
0.1
966
Normal
0.1
978
Normal
0.1
635
Tumor
0.1
914
Normal
0.1
755
Tumor
0.1
817
Tumor
0.1
413
Tumor
0.1
313
Tumor
0.1
481
Tumor
0.1
431
Tumor
0.1
492
Normal
0.1
866
Normal
0.1
411
Tumor
0.1
864
Normal
0.1
363
Tumor
0.1
467
Tumor
0.1
1027
Tumor
0.1
923
Tumor
0.1
351
Tumor
0.1
535
Tumor
0.1
912
Normal
0.1
538
Normal
0.1
965
Tumor
0.1
952
Normal
0.1
383
Tumor
0.1
221
Tumor
0.1
958
Normal
0.1
448
Normal
0.1
728
Normal
0.1
968
Normal
0.1
546
Normal
0.1
852
Normal
0.1
1045
Tumor
0.1
922
Normal
0.1
125
Tumor
0.1
494
Normal
0.1
1021
Tumor
0.0
857
Tumor
0.0
391
Tumor
0.0
814
Normal
0.0
472
Normal
0.0
1014
Normal
0.0
518
Normal
0.0
862
Normal
0.0
742
Normal
0.0
746
Normal
0.0
528
Normal
0.0
1044
Normal
0.0
1028
Normal
0.0
463
Tumor
0.0
727
Tumor
0.0
187
Tumor
0.0
661
Tumor
0.0
482
Normal
0.0
698
Normal
0.0
1016
Normal
0.0
462
Normal
0.0
943
Tumor
0.0
412
Normal
0.0
926
Normal
0.0
261
Tumor
0.0
721
Tumor
0.0
858
Normal
0.0
455
Tumor
0.0
916
Normal
0.0
514
Normal
0.0
465
Tumor
0.0
364
Normal
0.0
1046
Normal
0.0
526
Normal
0.0
361
Tumor
0.0
572
Normal
0.0
474
Normal
0.0
135
Tumor
0.0
1032
Normal
0.0
513
Tumor
0.0
884
Normal
0.0
558
Normal
0.0
421
Tumor
0.0
938
Normal
0.0
1022
Normal
0.0
744
Normal
0.0
284
Normal
0.0
224
Normal
0.0
738
Normal
0.0
722
Normal
0.0
1042
Normal
0.0
534
Normal
0.0
617
Tumor
0.0
882
Normal
0.0
874
Normal
0.0
353
Tumor
0.0
217
Tumor
-0.1
367
Tumor
-0.1
963
Tumor
-0.1
1026
Normal
-0.1
447
Tumor
-0.1
416
Normal
-0.1
982
Normal
-0.1
127
Tumor
-0.1
964
Normal
-0.1
258
Normal
-0.1
212
Normal
-0.1
112
Tumor
-0.1
357
Tumor
-0.1
975
Tumor
-0.1
434
Normal
-0.1
124
Normal
-0.1
297
Tumor
-0.1
362
Normal
-0.1
868
Normal
-0.1
983
Tumor
-0.1
976
Normal
-0.1
741
Tumor
-0.1
878
Normal
-0.1
286
Normal
-0.1
824
Normal
-0.1
384
Normal
-0.1
223
Tumor
-0.1
228
Normal
-0.1
574
Normal
-0.1
573
Tumor
-0.1
517
Tumor
-0.1
956
Normal
-0.1
328
Normal
-0.1
227
Tumor
-0.1
445
Tumor
-0.1
232
Normal
-0.1
737
Tumor
-0.1
218
Normal
-0.1
285
Tumor
-0.1
268
Normal
-0.1
396
Normal
-0.1
386
Normal
-0.1
468
Normal
-0.1
312
Normal
-0.1
527
Tumor
-0.1
343
Tumor
-0.1
571
Tumor
-0.1
452
Normal
-0.2
393
Tumor
-0.2
723
Tumor
-0.2
195
Tumor
-0.2
666
Normal
-0.2
191
Tumor
-0.2
1043
Tumor
-0.2
213
Tumor
-0.2
568
Normal
-0.2
564
Normal
-0.2
344
Normal
-0.2
917
Tumor
-0.2
466
Normal
-0.2
672
Normal
-0.2
456
Normal
-0.2
813
Tumor
-0.2
818
Normal
-0.2
145
Tumor
-0.2
777
Tumor
-0.2
515
Tumor
-0.2
641
Tumor
-0.2
816
Normal
-0.2
298
Normal
-0.2
433
Tumor
-0.2
663
Tumor
-0.2
664
Normal
-0.2
356
Normal
-0.2
331
Tumor
-0.2
523
Tumor
-0.2
262
Normal
-0.2
444
Normal
-0.2
743
Tumor
-0.2
188
Normal
-0.2
877
Tumor
-0.2
648
Normal
-0.2
662
Normal
-0.2
185
Tumor
-0.2
628
Normal
-0.2
278
Normal
-0.2
426
Normal
-0.2
376
Normal
-0.2
192
Normal
-0.2
385
Tumor
-0.2
132
Normal
-0.3
446
Normal
-0.3
616
Normal
-0.3
955
Tumor
-0.3
148
Normal
-0.3
392
Normal
-0.3
436
Normal
-0.3
491
Tumor
-0.3
271
Tumor
-0.3
277
Tumor
-0.3
214
Normal
-0.3
366
Normal
-0.3
352
Normal
-0.3
636
Normal
-0.3
388
Normal
-0.3
272
Normal
-0.3
114
Normal
-0.3
627
Tumor
-0.3
172
Normal
-0.3
186
Normal
-0.3
136
Normal
-0.3
341
Tumor
-0.3
126
Normal
-0.3
142
Normal
-0.3
354
Normal
-0.3
358
Normal
-0.3
713
Tumor
-0.3
368
Normal
-0.3
327
Tumor
-0.3
365
Tumor
-0.3
342
Normal
-0.3
138
Normal
-0.3
222
Normal
-0.3
647
Tumor
-0.3
394
Normal
-0.3
111
Normal
-0.3
196
Normal
-0.4
162
Normal
-0.4
423
Tumor
-0.4
427
Tumor
-0.4
424
Normal
-0.4
141
Tumor
-0.4
642
Normal
-0.4
432
Normal
-0.4
615
Tumor
-0.4
618
Normal
-0.4
128
Normal
-0.4
422
Normal
-0.4
671
Tumor
-0.4
464
Normal
-0.4
414
Normal
-0.4
332
Normal
-0.5
146
Normal
-0.5
314
Normal
-0.5
863
Tumor
-0.5
428
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
