MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.8 nTPM
HPA Brain:42.7 nTPM
GTEx:32.8 nTPM
FANTOM5:126.9 Scaled Tags Per Million
Pig:100.9 nTPM
Mouse:187.5 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
1870 Female, age 42, unknown 43.1
2586 Male, age 75, left hemisphere 39.8
2411 Female, age 72, unknown 37.3
2019 Male, age 18, unknown 36.2
1827 Male, age 72, unknown 34.5
2666 Male, age 74, left hemisphere 32.0
1833 Male, age 53, unknown 30.1
2828 Female, age 72, unknown 29.0
2219 Male, age 76, both hemispheres 28.3
1830 Male, age 51, unknown 24.8
Dorsal raphe nucleus
nTPM: 39.5
2047 Male, age 72, unknown 46.2
2298 Female, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 39.8
1828 Male, age 53, unknown 38.4
2016 Female, age 72, unknown 32.0
Inferior colliculus
nTPM: 31.1
2097 Female, age 72, unknown 37.1
1890 Male, age 53, unknown 30.2
1848 Female, age 42, unknown 29.7
2849 Male, age 72, unknown 27.5
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Periaquaductal grey, anterior
nTPM: 36.5
2502 Female, age 75, unknown 46.5
1947 Male, age 18, unknown 34.2
1795 Male, age 51, unknown 28.7
Periaquaductal grey, dorsal
nTPM: 33.9
1840 Male, age 53, unknown 42.8
2464 Female, age 72, unknown 31.9
2850 Male, age 76, both hemispheres 31.4
1831 Male, age 72, unknown 29.7
Periaquaductal grey, lateral
nTPM: 25.6
2140 Male, age 76, both hemispheres 29.0
2053 Male, age 18, unknown 28.1
2272 Male, age 74, both hemispheres 19.8
Pretectal area
nTPM: 36.8
2407 Male, age 75, both hemispheres 48.6
1816 Male, age 51, unknown 40.9
1944 Female, age 72, unknown 40.4
2667 Female, age 75, unknown 40.4
1817 Female, age 42, unknown 40.0
2007 Male, age 72, unknown 38.3
1815 Male, age 53, unknown 35.4
2273 Male, age 74, both hemispheres 33.9
2825 Male, age 18, unknown 32.7
2316 Male, age 76, right hemisphere 27.2
2224 Female, age 72, unknown 26.5
Red nucleus
nTPM: 32.0
1821 Female, age 72, unknown 39.4
2769 Male, age 72, unknown 36.3
1865 Male, age 51, unknown 36.0
1904 Male, age 53, unknown 35.0
2227 Male, age 72, unknown 34.1
2584 Male, age 75, left hemisphere 32.4
1954 Female, age 42, unknown 31.3
2588 Male, age 74, left hemisphere 29.9
2785 Male, age 18, unknown 29.9
2823 Male, age 76, right hemisphere 29.2
2503 Female, age 72, unknown 26.6
2725 Female, age 75, unknown 24.6
Substantia nigra
nTPM: 40.9
1916 Female, age 42, unknown 52.9
2409 Female, age 72, unknown 52.3
1851 Male, age 51, unknown 51.1
2241 Male, age 72, unknown 44.3
1889 Female, age 72, unknown 44.1
2583 Male, age 75, right hemisphere 39.1
2699 Male, age 18, unknown 37.5
1941 Male, age 53, unknown 37.0
2590 Female, age 75, unknown 31.0
2665 Male, age 74, both hemispheres 20.2
Superior colliculus
nTPM: 32.0
2664 Male, age 75, both hemispheres 50.1
2668 Female, age 75, unknown 35.5
2261 Male, age 18, unknown 33.5
1895 Male, age 76, right hemisphere 33.3
1839 Male, age 51, unknown 32.0
2087 Female, age 72, unknown 31.0
1796 Male, age 53, unknown 28.9
1913 Female, age 42, unknown 26.6
2587 Male, age 74, left hemisphere 26.3
1995 Male, age 72, unknown 22.3
Ventral tegmental area
nTPM: 41.2
1915 Female, age 42, unknown 45.4
2410 Female, age 72, unknown 41.9
1942 Male, age 51, unknown 40.3
2223 Female, age 72, unknown 40.0
2021 Male, age 53, unknown 39.8
2218 Male, age 76, both hemispheres 39.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.8
Samples: 139

Max nTPM: 58.6
Min nTPM: 0.0
Std nTPM: 7.6
Median nTPM: 31.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 53.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 49.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 48.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 46.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 46.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 45.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 126.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 126.9
FF:10158-103A5 76 years, female 126.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 100.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.1
Samples: 4

Max nTPM: 109.2
Min nTPM: 82.4
Sample A Female 109.2
Sample B Female 84.0
Sample C Male 88.9
Sample D Male 82.4
Midbrain
nTPM: 100.9
Samples: 4

Max nTPM: 119.8
Min nTPM: 84.3
Sample A Female 119.8
Sample B Female 104.9
Sample C Male 94.7
Sample D Male 84.3
Periaqueductal gray
nTPM: 81.7
Samples: 3

Max nTPM: 86.6
Min nTPM: 75.0
Sample B Female 83.4
Sample C Male 86.6
Sample D Male 75.0
Superior colliculi
nTPM: 91.7
Samples: 4

Max nTPM: 100.9
Min nTPM: 78.5
Sample A Female 100.9
Sample B Female 78.5
Sample C Male 96.0
Sample D Male 91.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 187.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 187.5
Samples: 4

Max nTPM: 192.0
Min nTPM: 183.3
Sample A Male 183.3
Sample B Male 188.5
Sample C Female 186.3
Sample D Female 192.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
70303612 Antisense, RP_050609_01_H12, Mouse strain C57BL/6J (56 days, male) 3.0

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