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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3GLB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
118.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
57.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
54.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
24.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
21.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
19.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SH3GLB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
1.1
147
Tumor
1.0
351
Tumor
0.7
283
Tumor
0.6
395
Tumor
0.6
573
Tumor
0.6
191
Tumor
0.5
851
Tumor
0.5
647
Tumor
0.5
557
Tumor
0.5
311
Tumor
0.4
536
Normal
0.4
661
Tumor
0.4
1021
Tumor
0.4
1025
Tumor
0.4
125
Tumor
0.4
925
Tumor
0.4
145
Tumor
0.4
567
Tumor
0.4
192
Normal
0.4
957
Tumor
0.4
545
Tumor
0.4
375
Tumor
0.4
1027
Tumor
0.3
1013
Tumor
0.3
131
Tumor
0.3
525
Tumor
0.3
297
Tumor
0.3
715
Tumor
0.3
211
Tumor
0.3
571
Tumor
0.3
745
Tumor
0.3
923
Tumor
0.3
863
Tumor
0.3
617
Tumor
0.3
697
Tumor
0.3
665
Tumor
0.3
213
Tumor
0.3
477
Tumor
0.3
447
Tumor
0.3
965
Tumor
0.3
327
Tumor
0.2
537
Tumor
0.2
343
Tumor
0.2
393
Tumor
0.2
778
Normal
0.2
916
Normal
0.2
627
Tumor
0.2
918
Normal
0.2
455
Tumor
0.2
981
Tumor
0.2
451
Tumor
0.2
331
Tumor
0.2
427
Tumor
0.2
641
Tumor
0.2
492
Normal
0.2
498
Normal
0.2
355
Tumor
0.2
467
Tumor
0.2
671
Tumor
0.2
527
Tumor
0.2
195
Tumor
0.2
491
Tumor
0.2
444
Normal
0.2
415
Tumor
0.2
1045
Tumor
0.2
425
Tumor
0.2
387
Tumor
0.2
978
Normal
0.2
943
Tumor
0.2
478
Normal
0.1
1015
Tumor
0.1
513
Tumor
0.1
984
Normal
0.1
383
Tumor
0.1
434
Normal
0.1
777
Tumor
0.1
966
Normal
0.1
814
Normal
0.1
816
Normal
0.1
958
Normal
0.1
786
Normal
0.1
917
Tumor
0.1
824
Normal
0.1
187
Tumor
0.1
421
Tumor
0.1
713
Tumor
0.1
472
Normal
0.1
171
Tumor
0.1
724
Normal
0.1
818
Normal
0.1
852
Normal
0.1
365
Tumor
0.1
857
Tumor
0.1
328
Normal
0.1
815
Tumor
0.1
976
Normal
0.1
817
Tumor
0.1
188
Normal
0.1
823
Tumor
0.1
161
Tumor
0.1
728
Normal
0.1
123
Tumor
0.1
952
Normal
0.1
563
Tumor
0.1
756
Normal
0.1
913
Tumor
0.1
391
Tumor
0.1
268
Normal
0.1
1044
Normal
0.1
926
Normal
0.1
696
Normal
0.1
385
Tumor
0.1
461
Tumor
0.1
558
Normal
0.1
723
Tumor
0.1
881
Tumor
0.1
944
Normal
0.1
471
Tumor
0.1
185
Tumor
0.1
538
Normal
0.1
223
Tumor
0.1
686
Normal
0.1
1041
Tumor
0.1
716
Normal
0.0
483
Tumor
0.0
535
Tumor
0.0
526
Normal
0.0
953
Tumor
0.0
516
Normal
0.0
514
Normal
0.0
1014
Normal
0.0
261
Tumor
0.0
977
Tumor
0.0
518
Normal
0.0
137
Tumor
0.0
224
Normal
0.0
968
Normal
0.0
212
Normal
0.0
721
Tumor
0.0
284
Normal
0.0
515
Tumor
0.0
864
Normal
0.0
868
Normal
0.0
262
Normal
0.0
217
Tumor
0.0
672
Normal
0.0
462
Normal
0.0
866
Normal
0.0
746
Normal
0.0
663
Tumor
0.0
384
Normal
0.0
386
Normal
0.0
742
Normal
0.0
126
Normal
0.0
975
Tumor
0.0
915
Tumor
0.0
494
Normal
0.0
474
Normal
0.0
493
Tumor
0.0
1016
Normal
0.0
148
Normal
0.0
954
Normal
0.0
956
Normal
0.0
416
Normal
0.0
924
Normal
0.0
528
Normal
0.0
364
Normal
0.0
312
Normal
0.0
218
Normal
0.0
1031
Tumor
N/A
874
Normal
0.0
741
Tumor
0.0
955
Tumor
0.0
135
Tumor
0.0
332
Normal
0.0
914
Normal
0.0
922
Normal
0.0
858
Normal
0.0
884
Normal
0.0
411
Tumor
0.0
963
Tumor
0.0
112
Tumor
0.0
446
Normal
0.0
368
Normal
0.0
738
Normal
0.0
392
Normal
0.0
533
Tumor
0.0
982
Normal
0.0
554
Normal
0.0
356
Normal
0.0
964
Normal
0.0
1028
Normal
0.0
124
Normal
0.0
1046
Normal
0.0
572
Normal
0.0
448
Normal
0.0
482
Normal
0.0
574
Normal
0.0
344
Normal
0.0
883
Tumor
0.0
278
Normal
0.0
685
Tumor
-0.1
433
Tumor
-0.1
221
Tumor
-0.1
861
Tumor
-0.1
722
Normal
-0.1
695
Tumor
-0.1
146
Normal
-0.1
744
Normal
-0.1
231
Tumor
-0.1
138
Normal
-0.1
214
Normal
-0.1
352
Normal
-0.1
1026
Normal
-0.1
698
Normal
-0.1
664
Normal
-0.1
938
Normal
-0.1
546
Normal
-0.1
396
Normal
-0.1
463
Tumor
-0.1
314
Normal
-0.1
1032
Normal
-0.1
1022
Normal
-0.1
142
Normal
-0.1
136
Normal
-0.1
272
Normal
-0.1
196
Normal
-0.1
298
Normal
-0.1
113
Tumor
-0.1
737
Tumor
-0.1
388
Normal
-0.1
162
Normal
-0.1
413
Tumor
-0.1
341
Tumor
-0.1
232
Normal
-0.1
727
Tumor
-0.1
873
Tumor
-0.1
714
Normal
-0.1
568
Normal
-0.1
862
Normal
-0.1
172
Normal
-0.1
286
Normal
-0.1
487
Tumor
-0.1
186
Normal
-0.1
865
Tumor
-0.1
662
Normal
-0.1
394
Normal
-0.1
755
Tumor
-0.1
412
Normal
-0.1
484
Normal
-0.1
367
Tumor
-0.1
1043
Tumor
-0.1
436
Normal
-0.2
111
Normal
-0.2
258
Normal
-0.2
353
Tumor
-0.2
424
Normal
-0.2
564
Normal
-0.2
642
Normal
-0.2
257
Tumor
-0.2
114
Normal
-0.2
628
Normal
-0.2
813
Tumor
-0.2
937
Tumor
-0.2
227
Tumor
-0.2
878
Normal
-0.2
882
Normal
-0.2
362
Normal
-0.2
666
Normal
-0.2
313
Tumor
-0.2
431
Tumor
-0.2
785
Tumor
-0.2
473
Tumor
-0.2
432
Normal
-0.2
354
Normal
-0.2
921
Tumor
-0.2
497
Tumor
-0.2
443
Tumor
-0.2
481
Tumor
-0.2
488
Normal
-0.2
1042
Normal
-0.2
271
Tumor
-0.2
132
Normal
-0.2
951
Tumor
-0.2
912
Normal
-0.2
618
Normal
-0.2
141
Tumor
-0.2
228
Normal
-0.2
553
Tumor
-0.2
358
Normal
-0.2
376
Normal
-0.2
468
Normal
-0.2
422
Normal
-0.2
222
Normal
-0.2
616
Normal
-0.2
464
Normal
-0.2
428
Normal
-0.2
456
Normal
-0.3
534
Normal
-0.3
636
Normal
-0.3
524
Normal
-0.3
361
Tumor
-0.3
983
Tumor
-0.3
452
Normal
-0.3
366
Normal
-0.3
867
Tumor
-0.3
466
Normal
-0.3
342
Normal
-0.3
285
Tumor
-0.3
877
Tumor
-0.3
648
Normal
-0.3
414
Normal
-0.3
127
Tumor
-0.3
967
Tumor
-0.3
363
Tumor
-0.3
277
Tumor
-0.3
465
Tumor
-0.3
128
Normal
-0.4
426
Normal
-0.4
911
Tumor
-0.4
445
Tumor
-0.4
615
Tumor
-0.4
635
Tumor
-0.4
423
Tumor
-0.5
435
Tumor
-0.6
743
Tumor
-0.6
267
Tumor
-0.6
357
Tumor
-0.8
523
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
