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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JAK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
JAK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.5
Number of samples
231
Samples
Sample
Description
TPM
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
1.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.1
918
Normal
0.9
916
Normal
0.9
138
Normal
0.9
211
Tumor
0.9
262
Normal
0.9
425
Tumor
0.8
917
Tumor
0.7
136
Normal
0.7
224
Normal
0.7
924
Normal
0.6
728
Normal
0.6
528
Normal
0.6
492
Normal
0.6
926
Normal
0.6
258
Normal
0.6
142
Normal
0.6
421
Tumor
0.5
914
Normal
0.5
546
Normal
0.5
126
Normal
0.5
498
Normal
0.5
882
Normal
0.5
162
Normal
0.5
172
Normal
0.5
494
Normal
0.5
514
Normal
0.5
778
Normal
0.5
1044
Normal
0.5
1042
Normal
0.4
111
Normal
0.4
912
Normal
0.4
976
Normal
0.4
978
Normal
0.4
148
Normal
0.4
188
Normal
0.4
738
Normal
0.4
714
Normal
0.4
526
Normal
0.4
1028
Normal
0.4
312
Normal
0.4
114
Normal
0.4
966
Normal
0.4
452
Normal
0.4
366
Normal
0.4
364
Normal
0.4
468
Normal
0.4
141
Tumor
0.4
232
Normal
0.4
814
Normal
0.4
362
Normal
0.4
436
Normal
0.4
721
Tumor
0.4
278
Normal
0.4
1026
Normal
0.4
222
Normal
0.4
756
Normal
0.4
534
Normal
0.4
723
Tumor
0.4
186
Normal
0.4
984
Normal
0.4
384
Normal
0.3
484
Normal
0.3
536
Normal
0.3
124
Normal
0.3
465
Tumor
0.3
1014
Normal
0.3
628
Normal
0.3
128
Normal
0.3
464
Normal
0.3
466
Normal
0.3
627
Tumor
0.3
192
Normal
0.3
137
Tumor
0.3
432
Normal
0.3
666
Normal
0.3
187
Tumor
0.3
314
Normal
0.3
218
Normal
0.3
113
Tumor
0.3
954
Normal
0.3
786
Normal
0.3
298
Normal
0.3
884
Normal
0.3
446
Normal
0.3
456
Normal
0.3
1016
Normal
0.3
686
Normal
0.3
518
Normal
0.3
642
Normal
0.3
862
Normal
0.3
777
Tumor
0.3
963
Tumor
0.3
722
Normal
0.3
328
Normal
0.3
868
Normal
0.3
472
Normal
0.3
724
Normal
0.3
922
Normal
0.3
196
Normal
0.3
448
Normal
0.3
716
Normal
0.3
272
Normal
0.3
1015
Tumor
0.3
462
Normal
0.3
332
Normal
0.3
818
Normal
0.3
482
Normal
0.3
956
Normal
0.2
368
Normal
0.2
1046
Normal
0.2
365
Tumor
0.2
493
Tumor
0.2
858
Normal
0.2
558
Normal
0.2
661
Tumor
0.2
214
Normal
0.2
878
Normal
0.2
112
Tumor
0.2
698
Normal
0.2
488
Normal
0.2
568
Normal
0.2
1032
Normal
0.2
284
Normal
0.2
572
Normal
0.2
824
Normal
0.2
662
Normal
0.2
864
Normal
0.2
212
Normal
0.2
866
Normal
0.2
944
Normal
0.2
415
Tumor
0.2
952
Normal
0.2
564
Normal
0.2
478
Normal
0.2
664
Normal
0.2
376
Normal
0.2
955
Tumor
0.2
286
Normal
0.2
964
Normal
0.2
958
Normal
0.2
1022
Normal
0.2
455
Tumor
0.2
392
Normal
0.2
383
Tumor
0.2
697
Tumor
0.1
491
Tumor
0.1
636
Normal
0.1
131
Tumor
0.1
524
Normal
0.1
386
Normal
0.1
356
Normal
0.1
696
Normal
0.1
413
Tumor
0.1
874
Normal
0.1
474
Normal
0.1
648
Normal
0.1
483
Tumor
0.1
618
Normal
0.1
416
Normal
0.1
977
Tumor
0.1
742
Normal
0.1
852
Normal
0.1
943
Tumor
0.1
516
Normal
0.1
396
Normal
0.1
861
Tumor
0.1
968
Normal
0.1
447
Tumor
0.1
938
Normal
0.1
146
Normal
0.1
616
Normal
0.1
352
Normal
0.1
615
Tumor
0.1
261
Tumor
0.1
563
Tumor
0.1
412
Normal
0.1
857
Tumor
0.1
816
Normal
0.1
573
Tumor
0.1
1045
Tumor
0.1
277
Tumor
0.1
574
Normal
0.1
913
Tumor
0.1
195
Tumor
0.1
1013
Tumor
0.0
672
Normal
0.0
444
Normal
0.0
223
Tumor
0.0
434
Normal
0.0
394
Normal
0.0
744
Normal
0.0
125
Tumor
0.0
135
Tumor
0.0
228
Normal
0.0
217
Tumor
0.0
185
Tumor
0.0
617
Tumor
0.0
161
Tumor
0.0
713
Tumor
0.0
982
Normal
0.0
355
Tumor
0.0
695
Tumor
0.0
191
Tumor
0.0
231
Tumor
0.0
867
Tumor
0.0
481
Tumor
-0.1
213
Tumor
-0.1
388
Normal
-0.1
538
Normal
-0.1
746
Normal
-0.1
823
Tumor
-0.1
127
Tumor
-0.1
497
Tumor
-0.1
1031
Tumor
-0.1
554
Normal
-0.1
283
Tumor
-0.1
937
Tumor
-0.1
268
Normal
-0.1
865
Tumor
-0.1
467
Tumor
-0.1
975
Tumor
-0.1
1025
Tumor
-0.1
755
Tumor
-0.1
271
Tumor
-0.1
851
Tumor
-0.1
463
Tumor
-0.1
665
Tumor
-0.1
813
Tumor
-0.1
921
Tumor
-0.1
327
Tumor
-0.1
525
Tumor
-0.1
873
Tumor
-0.1
715
Tumor
-0.1
523
Tumor
-0.2
297
Tumor
-0.2
391
Tumor
-0.2
385
Tumor
-0.2
915
Tumor
-0.2
737
Tumor
-0.2
354
Normal
-0.2
227
Tumor
-0.2
817
Tumor
-0.2
785
Tumor
-0.2
353
Tumor
-0.2
527
Tumor
-0.2
285
Tumor
-0.2
571
Tumor
-0.2
451
Tumor
-0.2
461
Tumor
-0.2
375
Tumor
-0.2
471
Tumor
-0.2
171
Tumor
-0.2
393
Tumor
-0.2
953
Tumor
-0.2
424
Normal
-0.2
513
Tumor
-0.2
422
Normal
-0.2
685
Tumor
-0.3
395
Tumor
-0.3
981
Tumor
-0.3
426
Normal
-0.3
221
Tumor
-0.3
363
Tumor
-0.3
445
Tumor
-0.3
487
Tumor
-0.3
641
Tumor
-0.3
428
Normal
-0.3
515
Tumor
-0.3
433
Tumor
-0.3
663
Tumor
-0.3
535
Tumor
-0.3
727
Tumor
-0.3
557
Tumor
-0.3
883
Tumor
-0.3
517
Tumor
-0.3
671
Tumor
-0.3
414
Normal
-0.3
863
Tumor
-0.3
881
Tumor
-0.3
1043
Tumor
-0.3
411
Tumor
-0.4
147
Tumor
-0.4
923
Tumor
-0.4
553
Tumor
-0.4
983
Tumor
-0.4
477
Tumor
-0.4
123
Tumor
-0.4
435
Tumor
-0.4
925
Tumor
-0.4
965
Tumor
-0.4
1027
Tumor
-0.4
1021
Tumor
-0.4
132
Normal
-0.5
815
Tumor
-0.5
344
Normal
-0.5
367
Tumor
-0.5
957
Tumor
-0.5
145
Tumor
-0.5
361
Tumor
-0.5
647
Tumor
-0.5
343
Tumor
-0.5
313
Tumor
-0.5
443
Tumor
-0.5
967
Tumor
-0.5
745
Tumor
-0.6
427
Tumor
-0.6
342
Normal
-0.6
423
Tumor
-0.6
537
Tumor
-0.6
431
Tumor
-0.6
387
Tumor
-0.6
545
Tumor
-0.6
257
Tumor
-0.6
1041
Tumor
-0.6
267
Tumor
-0.6
473
Tumor
-0.6
911
Tumor
-0.7
635
Tumor
-0.7
533
Tumor
-0.7
951
Tumor
-0.7
877
Tumor
-0.7
341
Tumor
-0.8
358
Normal
-0.9
567
Tumor
-0.9
351
Tumor
-1.3
743
Tumor
-2.0
741
Tumor
-2.0
357
Tumor
-2.1
331
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
