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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
105.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8136.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4555.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3968.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3902.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3007.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2344.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2101.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1859.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1152.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
834.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
698.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
574.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
393.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
374.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
326.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
315.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
278.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
272.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
225.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
191.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
178.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
148.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
128.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
124.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
111.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
96.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
93.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
92.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
90.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
78.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
75.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
71.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
62.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
61.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
52.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
46.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
42.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
41.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
37.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
31.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGC is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.5
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3623.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
1016.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
664.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
318.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
282.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
254.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
199.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
179.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
133.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
58.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
3.4
665
Tumor
3.4
171
Tumor
3.2
311
Tumor
3.0
877
Tumor
2.7
685
Tumor
2.5
411
Tumor
1.7
975
Tumor
1.4
937
Tumor
1.0
331
Tumor
0.8
123
Tumor
0.8
713
Tumor
0.6
332
Normal
0.6
314
Normal
0.5
278
Normal
0.5
573
Tumor
0.5
298
Normal
0.5
915
Tumor
0.5
186
Normal
0.3
162
Normal
0.3
1013
Tumor
0.3
172
Normal
0.3
148
Normal
0.2
742
Normal
0.2
666
Normal
0.2
1015
Tumor
0.1
232
Normal
0.1
557
Tumor
0.1
297
Tumor
0.0
671
Tumor
0.0
312
Normal
0.0
563
Tumor
0.0
185
Tumor
-0.1
558
Normal
-0.1
277
Tumor
-0.1
686
Normal
-0.1
728
Normal
-0.2
738
Normal
-0.2
727
Tumor
-0.2
664
Normal
-0.2
572
Normal
-0.2
267
Tumor
-0.2
564
Normal
-0.2
574
Normal
-0.2
161
Tumor
-0.3
724
Normal
-0.3
571
Tumor
-0.3
188
Normal
-0.3
258
Normal
-0.3
672
Normal
-0.3
568
Normal
-0.3
648
Normal
-0.3
662
Normal
-0.3
567
Tumor
-0.4
715
Tumor
-0.4
313
Tumor
-0.4
268
Normal
-0.4
661
Tumor
-0.4
663
Tumor
-0.4
257
Tumor
-0.5
743
Tumor
-0.5
187
Tumor
-0.5
714
Normal
-0.5
722
Normal
-0.5
737
Tumor
-0.5
963
Tumor
-0.6
647
Tumor
-0.6
147
Tumor
-0.6
363
Tumor
-0.6
696
Normal
-0.6
261
Tumor
-0.6
911
Tumor
-0.6
272
Normal
-0.6
721
Tumor
-0.6
385
Tumor
-0.7
716
Normal
-0.7
262
Normal
-0.7
271
Tumor
-0.7
878
Normal
-0.8
744
Normal
-0.9
882
Normal
-1.0
695
Tumor
-1.0
914
Normal
-1.0
912
Normal
-1.2
884
Normal
-1.2
913
Tumor
-1.3
967
Tumor
-1.3
741
Tumor
-1.3
327
Tumor
-1.4
881
Tumor
-1.4
883
Tumor
-1.4
964
Normal
-1.4
723
Tumor
-1.4
356
Normal
-1.5
391
Tumor
-1.5
127
Tumor
-1.5
1021
Tumor
-1.5
124
Normal
-1.6
114
Normal
-1.6
471
Tumor
-1.8
968
Normal
-1.8
364
Normal
-1.9
951
Tumor
-1.9
416
Normal
-1.9
126
Normal
-1.9
958
Normal
-2.0
355
Tumor
-2.0
128
Normal
-2.0
113
Tumor
-2.1
111
Normal
-2.1
965
Tumor
-2.2
125
Tumor
-2.2
112
Tumor
-2.2
966
Normal
-2.2
328
Normal
-2.3
943
Tumor
-2.3
953
Tumor
-2.3
977
Tumor
-2.5
955
Tumor
-2.5
983
Tumor
-2.5
1016
Normal
-2.6
415
Tumor
-2.7
952
Normal
-2.7
956
Normal
-2.8
944
Normal
-2.8
461
Tumor
-2.9
478
Normal
-2.9
473
Tumor
-3.0
938
Normal
-3.0
957
Tumor
-3.0
392
Normal
-3.0
388
Normal
-3.1
474
Normal
-3.1
395
Tumor
-3.1
394
Normal
-3.2
981
Tumor
-3.2
984
Normal
-3.2
954
Normal
-3.2
472
Normal
-3.2
482
Normal
-3.3
386
Normal
-3.3
396
Normal
-3.3
982
Normal
-3.3
481
Tumor
-3.4
1014
Normal
-3.4
1031
Tumor
-3.4
393
Tumor
-3.5
1025
Tumor
-3.5
918
Normal
-3.6
477
Tumor
-3.7
1027
Tumor
-3.8
926
Normal
-4.0
1041
Tumor
-4.1
1042
Normal
-4.1
924
Normal
-4.1
923
Tumor
-4.1
1026
Normal
-4.2
978
Normal
-4.2
921
Tumor
-4.3
462
Normal
-4.3
922
Normal
-4.5
925
Tumor
-4.6
916
Normal
-4.7
1032
Normal
-5.2
387
Tumor
-5.3
1028
Normal
-5.3
917
Tumor
-5.5
1022
Normal
-5.8
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
487
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
368
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
976
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
1046
Normal
N/A
864
Normal
N/A
1045
Tumor
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
433
Tumor
N/A
554
Normal
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
