MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.3 nTPM
HPA Brain:25.5 nTPM
GTEx:3.3 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:9.5 nTPM
Mouse:5.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
2586 Male, age 75, left hemisphere 36.3
2219 Male, age 76, both hemispheres 29.0
2666 Male, age 74, left hemisphere 27.0
1830 Male, age 51, unknown 24.6
1827 Male, age 72, unknown 24.0
1870 Female, age 42, unknown 23.3
2019 Male, age 18, unknown 23.3
2828 Female, age 72, unknown 23.2
1833 Male, age 53, unknown 22.9
2411 Female, age 72, unknown 21.4
Dorsal raphe nucleus
nTPM: 19.2
2047 Male, age 72, unknown 20.8
2016 Female, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 19.8
1828 Male, age 53, unknown 19.5
2298 Female, age 72, unknown 16.2
Inferior colliculus
nTPM: 22.4
2849 Male, age 72, unknown 24.8
1890 Male, age 53, unknown 22.7
1848 Female, age 42, unknown 22.2
2097 Female, age 72, unknown 20.0
Median raphe nucleus
nTPM: 20.2
2220 Male, age 76, midline 20.2
Periaquaductal grey, anterior
nTPM: 24.5
2502 Female, age 75, unknown 28.8
1947 Male, age 18, unknown 23.4
1795 Male, age 51, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 22.6
1840 Male, age 53, unknown 24.3
1831 Male, age 72, unknown 24.1
2850 Male, age 76, both hemispheres 21.5
2464 Female, age 72, unknown 20.6
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 25.3
2140 Male, age 76, both hemispheres 21.2
2272 Male, age 74, both hemispheres 18.8
Pretectal area
nTPM: 23.4
2407 Male, age 75, both hemispheres 30.8
1815 Male, age 53, unknown 27.6
1816 Male, age 51, unknown 26.3
1817 Female, age 42, unknown 25.5
2316 Male, age 76, right hemisphere 25.4
2007 Male, age 72, unknown 24.2
2825 Male, age 18, unknown 22.9
1944 Female, age 72, unknown 21.1
2224 Female, age 72, unknown 19.4
2667 Female, age 75, unknown 18.2
2273 Male, age 74, both hemispheres 16.3
Red nucleus
nTPM: 25.5
2584 Male, age 75, left hemisphere 29.4
2588 Male, age 74, left hemisphere 29.3
1904 Male, age 53, unknown 27.6
1865 Male, age 51, unknown 26.8
2503 Female, age 72, unknown 25.9
2823 Male, age 76, right hemisphere 24.8
2227 Male, age 72, unknown 24.6
2769 Male, age 72, unknown 24.5
2785 Male, age 18, unknown 24.4
2725 Female, age 75, unknown 23.9
1954 Female, age 42, unknown 23.6
1821 Female, age 72, unknown 21.7
Substantia nigra
nTPM: 19.9
2583 Male, age 75, right hemisphere 24.5
2665 Male, age 74, both hemispheres 22.2
2590 Female, age 75, unknown 22.1
2409 Female, age 72, unknown 22.0
1889 Female, age 72, unknown 21.2
2699 Male, age 18, unknown 19.0
1851 Male, age 51, unknown 18.8
2241 Male, age 72, unknown 17.7
1916 Female, age 42, unknown 16.5
1941 Male, age 53, unknown 14.7
Superior colliculus
nTPM: 25.1
2664 Male, age 75, both hemispheres 29.6
1913 Female, age 42, unknown 26.8
1796 Male, age 53, unknown 26.2
2261 Male, age 18, unknown 26.1
2668 Female, age 75, unknown 25.3
1895 Male, age 76, right hemisphere 24.5
1839 Male, age 51, unknown 24.1
2087 Female, age 72, unknown 23.7
1995 Male, age 72, unknown 23.2
2587 Male, age 74, left hemisphere 21.5
Ventral tegmental area
nTPM: 21.0
2223 Female, age 72, unknown 25.1
1942 Male, age 51, unknown 22.1
2410 Female, age 72, unknown 22.0
2021 Male, age 53, unknown 20.2
2218 Male, age 76, both hemispheres 19.1
1915 Female, age 42, unknown 17.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.3
Samples: 139

Max nTPM: 9.2
Min nTPM: 0.4
Std nTPM: 1.3
Median nTPM: 3.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 9.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 6.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 5.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 5.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 5.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 5.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 5.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.6
FF:10158-103A5 76 years, female 33.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.1
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.4
Sample A Female 8.4
Sample B Female 8.5
Sample C Male 10.0
Sample D Male 9.5
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 8.1
Sample A Female 8.4
Sample B Female 8.1
Sample C Male 11.7
Sample D Male 9.8
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.4
Min nTPM: 8.1
Sample B Female 8.4
Sample C Male 9.4
Sample D Male 8.1
Superior colliculi
nTPM: 8.7
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.3
Sample A Female 8.3
Sample B Female 9.6
Sample C Male 7.3
Sample D Male 9.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.6
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.2
Sample A Male 4.2
Sample B Male 6.7
Sample C Female 5.6
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69113769 Antisense, RP_050316_02_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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