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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUBP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
127.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
96.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
93.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
88.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
85.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
81.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
79.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
78.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
73.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
72.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
72.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
71.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
70.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
69.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
69.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
62.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
62.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
62.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
59.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
58.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
58.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
58.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
57.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
57.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
57.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
56.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
56.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
56.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
55.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
55.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
54.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
54.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
53.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
53.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
52.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
52.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
52.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
50.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
50.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
50.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
50.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
49.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
49.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
48.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
47.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
47.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
47.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
46.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
46.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
46.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
44.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
43.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
43.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
42.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
42.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
42.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
41.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
41.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
41.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
40.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
39.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
38.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
37.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
37.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
34.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
34.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
32.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
31.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
31.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
30.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
30.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
30.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
27.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
27.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
26.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
23.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUBP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.7
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
88.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
85.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
79.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
69.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
68.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
68.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
59.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
44.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
44.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
43.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
40.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
35.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
34.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
24.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.0
635
Tumor
0.9
465
Tumor
0.6
341
Tumor
0.6
1013
Tumor
0.6
647
Tumor
0.5
746
Normal
0.4
357
Tumor
0.4
342
Normal
0.4
755
Tumor
0.4
573
Tumor
0.4
981
Tumor
0.4
663
Tumor
0.4
112
Tumor
0.3
368
Normal
0.3
313
Tumor
0.3
222
Normal
0.3
358
Normal
0.3
571
Tumor
0.3
617
Tumor
0.3
171
Tumor
0.3
111
Normal
0.3
648
Normal
0.3
128
Normal
0.3
114
Normal
0.2
777
Tumor
0.2
742
Normal
0.2
186
Normal
0.2
466
Normal
0.2
452
Normal
0.2
392
Normal
0.2
914
Normal
0.2
361
Tumor
0.2
738
Normal
0.2
627
Tumor
0.2
813
Tumor
0.2
214
Normal
0.2
698
Normal
0.2
1022
Normal
0.2
411
Tumor
0.2
376
Normal
0.2
618
Normal
0.2
113
Tumor
0.2
468
Normal
0.2
124
Normal
0.2
955
Tumor
0.2
937
Tumor
0.2
873
Tumor
0.2
327
Tumor
0.2
386
Normal
0.2
388
Normal
0.2
1026
Normal
0.2
394
Normal
0.2
196
Normal
0.2
456
Normal
0.2
616
Normal
0.2
172
Normal
0.2
664
Normal
0.2
413
Tumor
0.2
354
Normal
0.2
344
Normal
0.2
366
Normal
0.2
267
Tumor
0.2
666
Normal
0.2
867
Tumor
0.2
862
Normal
0.2
141
Tumor
0.2
911
Tumor
0.2
393
Tumor
0.2
636
Normal
0.1
436
Normal
0.1
432
Normal
0.1
277
Tumor
0.1
714
Normal
0.1
162
Normal
0.1
145
Tumor
0.1
1015
Tumor
0.1
132
Normal
0.1
874
Normal
0.1
464
Normal
0.1
744
Normal
0.1
1028
Normal
0.1
391
Tumor
0.1
395
Tumor
0.1
977
Tumor
0.1
365
Tumor
0.1
741
Tumor
0.1
258
Normal
0.1
352
Normal
0.1
148
Normal
0.1
786
Normal
0.1
778
Normal
0.1
497
Tumor
0.1
146
Normal
0.1
353
Tumor
0.1
298
Normal
0.1
462
Normal
0.1
426
Normal
0.1
546
Normal
0.1
861
Tumor
0.1
445
Tumor
0.1
218
Normal
0.1
451
Tumor
0.1
953
Tumor
0.1
195
Tumor
0.1
396
Normal
0.1
728
Normal
0.1
868
Normal
0.1
912
Normal
0.1
952
Normal
0.1
628
Normal
0.1
272
Normal
0.1
568
Normal
0.1
192
Normal
0.1
642
Normal
0.1
721
Tumor
0.1
136
Normal
0.1
913
Tumor
0.1
422
Normal
0.1
188
Normal
0.1
433
Tumor
0.1
756
Normal
0.1
362
Normal
0.1
142
Normal
0.1
858
Normal
0.1
482
Normal
0.1
428
Normal
0.1
434
Normal
0.1
286
Normal
0.0
187
Tumor
0.0
662
Normal
0.0
723
Tumor
0.0
126
Normal
0.0
217
Tumor
0.0
414
Normal
0.0
416
Normal
0.0
228
Normal
0.0
355
Tumor
0.0
424
Normal
0.0
982
Normal
0.0
572
Normal
0.0
1041
Tumor
0.0
513
Tumor
0.0
554
Normal
0.0
383
Tumor
0.0
878
Normal
0.0
138
Normal
0.0
446
Normal
0.0
356
Normal
0.0
463
Tumor
0.0
564
Normal
0.0
1045
Tumor
0.0
864
Normal
0.0
785
Tumor
0.0
722
Normal
0.0
1016
Normal
0.0
488
Normal
0.0
484
Normal
0.0
515
Tumor
0.0
696
Normal
0.0
966
Normal
0.0
924
Normal
0.0
866
Normal
0.0
956
Normal
0.0
493
Tumor
0.0
278
Normal
0.0
191
Tumor
0.0
147
Tumor
0.0
351
Tumor
0.0
472
Normal
0.0
925
Tumor
0.0
1032
Normal
0.0
672
Normal
0.0
1014
Normal
0.0
818
Normal
0.0
487
Tumor
0.0
474
Normal
0.0
715
Tumor
0.0
686
Normal
0.0
574
Normal
0.0
724
Normal
0.0
328
Normal
0.0
527
Tumor
0.0
161
Tumor
0.0
716
Normal
0.0
127
Tumor
0.0
534
Normal
0.0
494
Normal
0.0
814
Normal
0.0
231
Tumor
0.0
1042
Normal
0.0
518
Normal
0.0
824
Normal
0.0
615
Tumor
0.0
423
Tumor
0.0
1046
Normal
0.0
526
Normal
0.0
343
Tumor
-0.1
284
Normal
-0.1
528
Normal
-0.1
516
Normal
-0.1
498
Normal
-0.1
262
Normal
-0.1
713
Tumor
-0.1
1027
Tumor
-0.1
384
Normal
-0.1
1044
Normal
-0.1
816
Normal
-0.1
978
Normal
-0.1
261
Tumor
-0.1
557
Tumor
-0.1
481
Tumor
-0.1
232
Normal
-0.1
448
Normal
-0.1
697
Tumor
-0.1
745
Tumor
-0.1
427
Tumor
-0.1
135
Tumor
-0.1
944
Normal
-0.1
444
Normal
-0.1
665
Tumor
-0.1
968
Normal
-0.1
364
Normal
-0.1
473
Tumor
-0.1
185
Tumor
-0.1
938
Normal
-0.1
312
Normal
-0.1
212
Normal
-0.1
984
Normal
-0.1
926
Normal
-0.1
884
Normal
-0.1
332
Normal
-0.1
563
Tumor
-0.1
461
Tumor
-0.1
412
Normal
-0.1
915
Tumor
-0.1
976
Normal
-0.1
922
Normal
-0.1
223
Tumor
-0.1
491
Tumor
-0.2
882
Normal
-0.2
852
Normal
-0.2
431
Tumor
-0.2
224
Normal
-0.2
268
Normal
-0.2
918
Normal
-0.2
558
Normal
-0.2
538
Normal
-0.2
387
Tumor
-0.2
492
Normal
-0.2
523
Tumor
-0.2
685
Tumor
-0.2
865
Tumor
-0.2
221
Tumor
-0.2
967
Tumor
-0.2
314
Normal
-0.2
455
Tumor
-0.2
954
Normal
-0.2
467
Tumor
-0.2
964
Normal
-0.2
923
Tumor
-0.2
213
Tumor
-0.2
443
Tumor
-0.2
661
Tumor
-0.2
271
Tumor
-0.2
957
Tumor
-0.2
123
Tumor
-0.2
125
Tumor
-0.2
477
Tumor
-0.3
533
Tumor
-0.3
375
Tumor
-0.3
137
Tumor
-0.3
943
Tumor
-0.3
367
Tumor
-0.3
916
Normal
-0.3
415
Tumor
-0.3
525
Tumor
-0.3
671
Tumor
-0.3
727
Tumor
-0.3
447
Tumor
-0.3
297
Tumor
-0.3
514
Normal
-0.3
311
Tumor
-0.3
857
Tumor
-0.3
958
Normal
-0.4
421
Tumor
-0.4
435
Tumor
-0.4
478
Normal
-0.4
285
Tumor
-0.4
257
Tumor
-0.4
815
Tumor
-0.4
483
Tumor
-0.4
536
Normal
-0.4
1043
Tumor
-0.4
363
Tumor
-0.4
883
Tumor
-0.4
881
Tumor
-0.4
975
Tumor
-0.4
1021
Tumor
-0.4
641
Tumor
-0.5
524
Normal
-0.5
517
Tumor
-0.5
851
Tumor
-0.5
877
Tumor
-0.5
545
Tumor
-0.5
567
Tumor
-0.5
1025
Tumor
-0.5
211
Tumor
-0.5
1031
Tumor
-0.5
917
Tumor
-0.5
921
Tumor
-0.5
385
Tumor
-0.5
737
Tumor
-0.5
283
Tumor
-0.6
743
Tumor
-0.6
535
Tumor
-0.6
331
Tumor
-0.6
553
Tumor
-0.6
963
Tumor
-0.6
965
Tumor
-0.6
425
Tumor
-0.6
951
Tumor
-0.6
227
Tumor
-0.6
823
Tumor
-0.6
131
Tumor
-0.7
471
Tumor
-0.7
817
Tumor
-0.7
983
Tumor
-0.7
863
Tumor
-0.7
537
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
