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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WAC is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
38.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WAC is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
121.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
110.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
88.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
78.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
72.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
72.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
71.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
69.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
67.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
62.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
61.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
60.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
60.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
58.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
57.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
53.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
53.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
53.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
52.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
49.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
49.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
48.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
48.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
48.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
45.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
45.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
44.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
44.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
44.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
42.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
42.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
42.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
42.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
37.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
37.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
28.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
23.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
1.4
131
Tumor
1.2
277
Tumor
1.2
343
Tumor
1.1
497
Tumor
1.0
354
Normal
1.0
473
Tumor
0.9
965
Tumor
0.9
517
Tumor
0.9
523
Tumor
0.9
358
Normal
0.9
344
Normal
0.9
695
Tumor
0.8
545
Tumor
0.8
355
Tumor
0.8
642
Normal
0.7
937
Tumor
0.7
352
Normal
0.7
743
Tumor
0.7
161
Tumor
0.7
627
Tumor
0.7
211
Tumor
0.7
447
Tumor
0.7
817
Tumor
0.6
1013
Tumor
0.6
513
Tumor
0.6
951
Tumor
0.6
813
Tumor
0.6
1043
Tumor
0.6
953
Tumor
0.6
815
Tumor
0.6
425
Tumor
0.6
685
Tumor
0.6
877
Tumor
0.6
636
Normal
0.6
1021
Tumor
0.6
641
Tumor
0.6
525
Tumor
0.6
487
Tumor
0.6
515
Tumor
0.6
737
Tumor
0.6
533
Tumor
0.5
628
Normal
0.5
957
Tumor
0.5
943
Tumor
0.5
865
Tumor
0.5
921
Tumor
0.5
881
Tumor
0.5
777
Tumor
0.5
331
Tumor
0.5
814
Normal
0.5
917
Tumor
0.5
477
Tumor
0.5
616
Normal
0.5
1025
Tumor
0.5
727
Tumor
0.4
411
Tumor
0.4
618
Normal
0.4
923
Tumor
0.4
341
Tumor
0.4
553
Tumor
0.4
223
Tumor
0.4
524
Normal
0.4
975
Tumor
0.4
285
Tumor
0.4
883
Tumor
0.4
1045
Tumor
0.4
663
Tumor
0.4
535
Tumor
0.4
491
Tumor
0.4
227
Tumor
0.4
393
Tumor
0.4
192
Normal
0.4
357
Tumor
0.4
483
Tumor
0.3
963
Tumor
0.3
431
Tumor
0.3
967
Tumor
0.3
527
Tumor
0.3
368
Normal
0.3
851
Tumor
0.3
635
Tumor
0.3
113
Tumor
0.3
391
Tumor
0.3
283
Tumor
0.3
313
Tumor
0.3
723
Tumor
0.3
112
Tumor
0.3
1031
Tumor
0.3
465
Tumor
0.3
267
Tumor
0.3
311
Tumor
0.3
221
Tumor
0.3
573
Tumor
0.3
297
Tumor
0.3
926
Normal
0.3
744
Normal
0.3
514
Normal
0.3
756
Normal
0.3
415
Tumor
0.3
925
Tumor
0.3
516
Normal
0.3
484
Normal
0.3
755
Tumor
0.3
286
Normal
0.3
385
Tumor
0.3
571
Tumor
0.3
715
Tumor
0.3
224
Normal
0.3
1015
Tumor
0.3
231
Tumor
0.3
471
Tumor
0.3
366
Normal
0.2
956
Normal
0.2
171
Tumor
0.2
916
Normal
0.2
786
Normal
0.2
924
Normal
0.2
271
Tumor
0.2
823
Tumor
0.2
536
Normal
0.2
955
Tumor
0.2
818
Normal
0.2
455
Tumor
0.2
954
Normal
0.2
396
Normal
0.2
568
Normal
0.2
387
Tumor
0.2
363
Tumor
0.2
498
Normal
0.2
554
Normal
0.2
572
Normal
0.2
362
Normal
0.2
647
Tumor
0.2
467
Tumor
0.2
922
Normal
0.2
493
Tumor
0.2
481
Tumor
0.2
952
Normal
0.2
461
Tumor
0.2
217
Tumor
0.2
696
Normal
0.2
537
Tumor
0.2
741
Tumor
0.2
724
Normal
0.2
857
Tumor
0.2
563
Tumor
0.2
526
Normal
0.2
574
Normal
0.2
392
Normal
0.2
327
Tumor
0.2
976
Normal
0.2
697
Tumor
0.2
534
Normal
0.2
966
Normal
0.2
478
Normal
0.2
882
Normal
0.2
386
Normal
0.2
913
Tumor
0.2
981
Tumor
0.1
984
Normal
0.1
388
Normal
0.1
413
Tumor
0.1
557
Tumor
0.1
427
Tumor
0.1
918
Normal
0.1
938
Normal
0.1
262
Normal
0.1
884
Normal
0.1
351
Tumor
0.1
714
Normal
0.1
328
Normal
0.1
558
Normal
0.1
127
Tumor
0.1
546
Normal
0.1
492
Normal
0.1
958
Normal
0.1
648
Normal
0.1
746
Normal
0.1
914
Normal
0.1
528
Normal
0.1
464
Normal
0.1
123
Tumor
0.1
482
Normal
0.1
867
Tumor
0.1
538
Normal
0.1
716
Normal
0.1
915
Tumor
0.1
982
Normal
0.1
228
Normal
0.1
615
Tumor
0.1
874
Normal
0.1
878
Normal
0.1
564
Normal
0.1
1026
Normal
0.1
364
Normal
0.1
567
Tumor
0.1
1016
Normal
0.1
977
Tumor
0.1
728
Normal
0.1
258
Normal
0.1
912
Normal
0.1
468
Normal
0.1
944
Normal
0.1
661
Tumor
0.1
213
Tumor
0.1
873
Tumor
0.1
983
Tumor
0.1
698
Normal
0.0
284
Normal
0.0
195
Tumor
0.0
463
Tumor
0.0
361
Tumor
0.0
911
Tumor
0.0
778
Normal
0.0
518
Normal
0.0
416
Normal
0.0
187
Tumor
0.0
394
Normal
0.0
742
Normal
0.0
968
Normal
0.0
824
Normal
0.0
1014
Normal
0.0
353
Tumor
0.0
443
Tumor
0.0
861
Tumor
0.0
858
Normal
0.0
745
Tumor
0.0
474
Normal
0.0
268
Normal
0.0
472
Normal
0.0
451
Tumor
0.0
257
Tumor
0.0
466
Normal
0.0
1046
Normal
0.0
488
Normal
0.0
212
Normal
0.0
738
Normal
0.0
412
Normal
0.0
395
Tumor
0.0
444
Normal
0.0
114
Normal
0.0
456
Normal
0.0
964
Normal
0.0
222
Normal
0.0
686
Normal
0.0
494
Normal
0.0
1042
Normal
0.0
866
Normal
0.0
816
Normal
-0.1
863
Tumor
-0.1
365
Tumor
-0.1
1028
Normal
-0.1
978
Normal
-0.1
713
Tumor
-0.1
462
Normal
-0.1
785
Tumor
-0.1
147
Tumor
-0.1
356
Normal
-0.1
1044
Normal
-0.1
124
Normal
-0.1
1027
Tumor
-0.1
125
Tumor
-0.1
218
Normal
-0.1
852
Normal
-0.1
662
Normal
-0.1
421
Tumor
-0.1
1041
Tumor
-0.1
666
Normal
-0.1
111
Normal
-0.1
126
Normal
-0.1
664
Normal
-0.2
191
Tumor
-0.2
864
Normal
-0.2
141
Tumor
-0.2
272
Normal
-0.2
433
Tumor
-0.2
423
Tumor
-0.2
434
Normal
-0.2
185
Tumor
-0.2
445
Tumor
-0.2
862
Normal
-0.2
376
Normal
-0.2
145
Tumor
-0.2
261
Tumor
-0.2
196
Normal
-0.2
428
Normal
-0.2
232
Normal
-0.2
722
Normal
-0.2
314
Normal
-0.2
312
Normal
-0.2
278
Normal
-0.3
452
Normal
-0.3
298
Normal
-0.3
446
Normal
-0.3
214
Normal
-0.3
868
Normal
-0.3
432
Normal
-0.3
135
Tumor
-0.3
186
Normal
-0.3
142
Normal
-0.3
721
Tumor
-0.3
172
Normal
-0.3
137
Tumor
-0.3
424
Normal
-0.3
671
Tumor
-0.4
665
Tumor
-0.4
162
Normal
-0.4
435
Tumor
-0.4
188
Normal
-0.4
146
Normal
-0.4
367
Tumor
-0.4
672
Normal
-0.4
448
Normal
-0.4
128
Normal
-0.4
148
Normal
-0.4
1022
Normal
-0.4
436
Normal
-0.4
136
Normal
-0.4
617
Tumor
-0.4
422
Normal
-0.5
383
Tumor
-0.5
1032
Normal
-0.5
414
Normal
-0.5
138
Normal
-0.5
132
Normal
-0.6
426
Normal
-0.6
375
Tumor
-0.7
332
Normal
-0.8
384
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
