MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.7 nTPM
HPA Brain:10.0 nTPM
GTEx:4.7 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:0.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2411 Female, age 72, unknown 11.2
1870 Female, age 42, unknown 11.0
2019 Male, age 18, unknown 10.4
1833 Male, age 53, unknown 10.0
1830 Male, age 51, unknown 9.8
1827 Male, age 72, unknown 9.7
2666 Male, age 74, left hemisphere 9.6
2219 Male, age 76, both hemispheres 8.7
2828 Female, age 72, unknown 7.9
2586 Male, age 75, left hemisphere 6.6
Dorsal raphe nucleus
nTPM: 9.5
2750 Male, age 76, both hemispheres 10.9
2298 Female, age 72, unknown 10.1
2016 Female, age 72, unknown 9.2
2047 Male, age 72, unknown 8.9
1828 Male, age 53, unknown 8.4
Inferior colliculus
nTPM: 10.0
2097 Female, age 72, unknown 11.1
2849 Male, age 72, unknown 9.9
1890 Male, age 53, unknown 9.8
1848 Female, age 42, unknown 9.3
Median raphe nucleus
nTPM: 9.3
2220 Male, age 76, midline 9.3
Periaquaductal grey, anterior
nTPM: 9.8
1947 Male, age 18, unknown 10.5
2502 Female, age 75, unknown 10.3
1795 Male, age 51, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 8.8
2464 Female, age 72, unknown 9.2
1840 Male, age 53, unknown 9.0
1831 Male, age 72, unknown 8.9
2850 Male, age 76, both hemispheres 8.3
Periaquaductal grey, lateral
nTPM: 9.5
2053 Male, age 18, unknown 9.9
2140 Male, age 76, both hemispheres 9.7
2272 Male, age 74, both hemispheres 8.8
Pretectal area
nTPM: 9.3
2224 Female, age 72, unknown 10.4
2316 Male, age 76, right hemisphere 10.2
1815 Male, age 53, unknown 10.1
2667 Female, age 75, unknown 9.6
1816 Male, age 51, unknown 9.4
2273 Male, age 74, both hemispheres 9.4
1817 Female, age 42, unknown 9.2
1944 Female, age 72, unknown 9.2
2007 Male, age 72, unknown 8.9
2825 Male, age 18, unknown 8.6
2407 Male, age 75, both hemispheres 7.2
Red nucleus
nTPM: 9.8
2823 Male, age 76, right hemisphere 10.8
1821 Female, age 72, unknown 10.5
1865 Male, age 51, unknown 10.4
2769 Male, age 72, unknown 10.2
2785 Male, age 18, unknown 10.1
1954 Female, age 42, unknown 9.9
1904 Male, age 53, unknown 9.8
2588 Male, age 74, left hemisphere 9.8
2725 Female, age 75, unknown 9.8
2227 Male, age 72, unknown 9.4
2584 Male, age 75, left hemisphere 8.6
2503 Female, age 72, unknown 8.4
Substantia nigra
nTPM: 9.6
2409 Female, age 72, unknown 15.0
1941 Male, age 53, unknown 9.8
2241 Male, age 72, unknown 9.8
1889 Female, age 72, unknown 9.7
2583 Male, age 75, right hemisphere 9.6
1851 Male, age 51, unknown 9.2
2590 Female, age 75, unknown 8.8
2665 Male, age 74, both hemispheres 8.6
2699 Male, age 18, unknown 7.9
1916 Female, age 42, unknown 7.8
Superior colliculus
nTPM: 9.5
1895 Male, age 76, right hemisphere 11.3
1913 Female, age 42, unknown 10.6
1839 Male, age 51, unknown 10.2
2587 Male, age 74, left hemisphere 10.2
1995 Male, age 72, unknown 9.8
2087 Female, age 72, unknown 9.4
2261 Male, age 18, unknown 9.4
2668 Female, age 75, unknown 9.3
1796 Male, age 53, unknown 8.8
2664 Male, age 75, both hemispheres 5.6
Ventral tegmental area
nTPM: 9.4
2410 Female, age 72, unknown 10.9
2223 Female, age 72, unknown 9.8
2021 Male, age 53, unknown 9.2
2218 Male, age 76, both hemispheres 9.1
1942 Male, age 51, unknown 8.8
1915 Female, age 42, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.7
Samples: 139

Max nTPM: 9.7
Min nTPM: 0.4
Std nTPM: 1.7
Median nTPM: 4.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 9.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 8.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 8.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 8.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 7.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 7.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 7.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 19.5
Sample C Male 17.1
Sample D Male 20.4
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 22.3
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 20.7
Sample C Male 18.3
Sample D Male 22.3
Periaqueductal gray
nTPM: 21.2
Samples: 3

Max nTPM: 22.6
Min nTPM: 19.6
Sample B Female 22.6
Sample C Male 19.6
Sample D Male 21.4
Superior colliculi
nTPM: 17.3
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.7
Sample A Female 15.9
Sample B Female 15.7
Sample C Male 18.5
Sample D Male 19.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.5
Sample C Female 0.1
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68162242 Antisense, RP_041122_02_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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