MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA Brain:62.3 nTPM
GTEx:43.9 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:68.4 nTPM
Mouse:76.3 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.3
1870 Female, age 42, unknown 57.8
2019 Male, age 18, unknown 56.9
2411 Female, age 72, unknown 55.6
1833 Male, age 53, unknown 55.4
1830 Male, age 51, unknown 54.8
1827 Male, age 72, unknown 53.3
2666 Male, age 74, left hemisphere 52.8
2828 Female, age 72, unknown 50.3
2219 Male, age 76, both hemispheres 50.2
2586 Male, age 75, left hemisphere 46.0
Dorsal raphe nucleus
nTPM: 51.8
2750 Male, age 76, both hemispheres 57.4
2298 Female, age 72, unknown 53.0
2047 Male, age 72, unknown 50.9
1828 Male, age 53, unknown 50.3
2016 Female, age 72, unknown 47.2
Inferior colliculus
nTPM: 53.0
2097 Female, age 72, unknown 54.5
1848 Female, age 42, unknown 52.9
1890 Male, age 53, unknown 52.3
2849 Male, age 72, unknown 52.2
Median raphe nucleus
nTPM: 62.3
2220 Male, age 76, midline 62.3
Periaquaductal grey, anterior
nTPM: 51.6
2502 Female, age 75, unknown 54.9
1947 Male, age 18, unknown 53.5
1795 Male, age 51, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 49.7
2850 Male, age 76, both hemispheres 54.5
2464 Female, age 72, unknown 49.0
1831 Male, age 72, unknown 48.1
1840 Male, age 53, unknown 47.4
Periaquaductal grey, lateral
nTPM: 49.1
2272 Male, age 74, both hemispheres 51.1
2053 Male, age 18, unknown 48.2
2140 Male, age 76, both hemispheres 47.9
Pretectal area
nTPM: 54.6
1817 Female, age 42, unknown 63.4
1815 Male, age 53, unknown 60.5
1816 Male, age 51, unknown 60.4
2007 Male, age 72, unknown 60.4
1944 Female, age 72, unknown 58.0
2224 Female, age 72, unknown 52.3
2316 Male, age 76, right hemisphere 50.3
2667 Female, age 75, unknown 50.3
2273 Male, age 74, both hemispheres 49.4
2825 Male, age 18, unknown 48.6
2407 Male, age 75, both hemispheres 47.0
Red nucleus
nTPM: 54.5
1821 Female, age 72, unknown 63.1
1865 Male, age 51, unknown 59.1
2725 Female, age 75, unknown 55.7
2785 Male, age 18, unknown 55.7
1954 Female, age 42, unknown 55.5
1904 Male, age 53, unknown 55.0
2588 Male, age 74, left hemisphere 53.9
2503 Female, age 72, unknown 52.8
2823 Male, age 76, right hemisphere 51.6
2769 Male, age 72, unknown 50.7
2584 Male, age 75, left hemisphere 50.5
2227 Male, age 72, unknown 50.0
Substantia nigra
nTPM: 57.1
2241 Male, age 72, unknown 63.2
1916 Female, age 42, unknown 60.6
1889 Female, age 72, unknown 60.4
1941 Male, age 53, unknown 59.9
1851 Male, age 51, unknown 57.3
2409 Female, age 72, unknown 56.7
2590 Female, age 75, unknown 54.9
2699 Male, age 18, unknown 54.8
2665 Male, age 74, both hemispheres 53.9
2583 Male, age 75, right hemisphere 49.0
Superior colliculus
nTPM: 51.9
2587 Male, age 74, left hemisphere 56.4
1913 Female, age 42, unknown 55.3
1895 Male, age 76, right hemisphere 53.7
2261 Male, age 18, unknown 53.6
2087 Female, age 72, unknown 53.2
2668 Female, age 75, unknown 53.0
1995 Male, age 72, unknown 51.9
1839 Male, age 51, unknown 51.7
1796 Male, age 53, unknown 48.3
2664 Male, age 75, both hemispheres 41.9
Ventral tegmental area
nTPM: 54.0
2410 Female, age 72, unknown 58.8
2218 Male, age 76, both hemispheres 56.2
1915 Female, age 42, unknown 55.3
2223 Female, age 72, unknown 55.3
2021 Male, age 53, unknown 50.9
1942 Male, age 51, unknown 47.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.9
Samples: 139

Max nTPM: 67.6
Min nTPM: 31.4
Std nTPM: 6.7
Median nTPM: 43.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 62.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.2
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 59.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 59.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 58.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 54.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 54.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 54.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 54.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.3
FF:10158-103A5 76 years, female 110.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.0
Samples: 4

Max nTPM: 70.2
Min nTPM: 49.1
Sample A Female 70.2
Sample B Female 61.9
Sample C Male 54.8
Sample D Male 49.1
Midbrain
nTPM: 64.2
Samples: 4

Max nTPM: 74.9
Min nTPM: 58.1
Sample A Female 74.9
Sample B Female 58.1
Sample C Male 64.6
Sample D Male 59.1
Periaqueductal gray
nTPM: 51.5
Samples: 3

Max nTPM: 53.1
Min nTPM: 49.6
Sample B Female 51.9
Sample C Male 53.1
Sample D Male 49.6
Superior colliculi
nTPM: 68.4
Samples: 4

Max nTPM: 69.8
Min nTPM: 65.7
Sample A Female 69.8
Sample B Female 69.8
Sample C Male 68.4
Sample D Male 65.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 76.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.3
Samples: 4

Max nTPM: 79.7
Min nTPM: 70.9
Sample A Male 70.9
Sample B Male 79.5
Sample C Female 79.7
Sample D Female 75.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
583567 Antisense, RP_040831_02_C09, Mouse strain C57BL/6J (56 days, male) 2.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org