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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XYLB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
41.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
37.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
24.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
20.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
XYLB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
1.1
465
Tumor
0.9
1045
Tumor
0.8
746
Normal
0.8
952
Normal
0.8
1026
Normal
0.8
615
Tumor
0.8
1046
Normal
0.7
482
Normal
0.7
222
Normal
0.7
354
Normal
0.7
723
Tumor
0.7
1022
Normal
0.7
824
Normal
0.7
742
Normal
0.6
436
Normal
0.6
298
Normal
0.6
186
Normal
0.6
221
Tumor
0.6
426
Normal
0.6
568
Normal
0.6
214
Normal
0.6
698
Normal
0.6
744
Normal
0.6
515
Tumor
0.6
924
Normal
0.5
162
Normal
0.5
616
Normal
0.5
431
Tumor
0.5
196
Normal
0.5
488
Normal
0.5
572
Normal
0.5
232
Normal
0.5
363
Tumor
0.5
567
Tumor
0.5
738
Normal
0.5
818
Normal
0.5
741
Tumor
0.5
481
Tumor
0.5
114
Normal
0.5
878
Normal
0.4
412
Normal
0.4
432
Normal
0.4
554
Normal
0.4
1016
Normal
0.4
128
Normal
0.4
148
Normal
0.4
435
Tumor
0.4
862
Normal
0.4
982
Normal
0.4
918
Normal
0.4
392
Normal
0.4
564
Normal
0.4
778
Normal
0.4
938
Normal
0.4
218
Normal
0.4
356
Normal
0.4
874
Normal
0.4
1021
Tumor
0.4
314
Normal
0.4
966
Normal
0.4
394
Normal
0.4
146
Normal
0.4
546
Normal
0.3
662
Normal
0.3
816
Normal
0.3
286
Normal
0.3
513
Tumor
0.3
951
Tumor
0.3
364
Normal
0.3
516
Normal
0.3
332
Normal
0.3
534
Normal
0.3
873
Tumor
0.3
445
Tumor
0.3
231
Tumor
0.3
695
Tumor
0.3
648
Normal
0.3
666
Normal
0.3
136
Normal
0.3
474
Normal
0.3
1032
Normal
0.3
882
Normal
0.3
1014
Normal
0.3
786
Normal
0.3
433
Tumor
0.3
553
Tumor
0.3
914
Normal
0.2
716
Normal
0.2
368
Normal
0.2
484
Normal
0.2
366
Normal
0.2
278
Normal
0.2
1025
Tumor
0.2
462
Normal
0.2
538
Normal
0.2
466
Normal
0.2
414
Normal
0.2
984
Normal
0.2
352
Normal
0.2
424
Normal
0.2
362
Normal
0.2
728
Normal
0.2
636
Normal
0.2
944
Normal
0.2
494
Normal
0.2
423
Tumor
0.2
138
Normal
0.2
696
Normal
0.2
456
Normal
0.2
514
Normal
0.2
284
Normal
0.2
142
Normal
0.2
722
Normal
0.2
1031
Tumor
0.2
376
Normal
0.2
258
Normal
0.2
777
Tumor
0.2
981
Tumor
0.2
571
Tumor
0.2
124
Normal
0.2
1044
Normal
0.2
428
Normal
0.1
528
Normal
0.1
563
Tumor
0.1
312
Normal
0.1
864
Normal
0.1
452
Normal
0.1
558
Normal
0.1
195
Tumor
0.1
852
Normal
0.1
685
Tumor
0.1
672
Normal
0.1
416
Normal
0.1
358
Normal
0.1
464
Normal
0.1
1042
Normal
0.1
1028
Normal
0.1
745
Tumor
0.1
172
Normal
0.1
1041
Tumor
0.1
867
Tumor
0.1
361
Tumor
0.1
448
Normal
0.1
714
Normal
0.1
472
Normal
0.1
434
Normal
0.1
785
Tumor
0.1
911
Tumor
0.1
915
Tumor
0.1
868
Normal
0.1
396
Normal
0.1
1015
Tumor
0.1
483
Tumor
0.1
132
Normal
0.0
664
Normal
0.0
866
Normal
0.0
518
Normal
0.0
574
Normal
0.0
217
Tumor
0.0
477
Tumor
0.0
127
Tumor
0.0
357
Tumor
0.0
277
Tumor
0.0
922
Normal
0.0
112
Tumor
0.0
473
Tumor
0.0
756
Normal
0.0
884
Normal
0.0
126
Normal
0.0
137
Tumor
0.0
618
Normal
0.0
271
Tumor
0.0
737
Tumor
0.0
913
Tumor
0.0
968
Normal
0.0
262
Normal
0.0
956
Normal
0.0
391
Tumor
0.0
443
Tumor
0.0
268
Normal
-0.1
642
Normal
-0.1
147
Tumor
-0.1
912
Normal
-0.1
815
Tumor
-0.1
388
Normal
-0.1
954
Normal
-0.1
188
Normal
-0.1
422
Normal
-0.1
386
Normal
-0.1
393
Tumor
-0.1
858
Normal
-0.1
955
Tumor
-0.1
883
Tumor
-0.1
384
Normal
-0.1
415
Tumor
-0.1
1013
Tumor
-0.1
921
Tumor
-0.1
715
Tumor
-0.1
446
Normal
-0.2
353
Tumor
-0.2
341
Tumor
-0.2
192
Normal
-0.2
111
Normal
-0.2
272
Normal
-0.2
365
Tumor
-0.2
926
Normal
-0.2
141
Tumor
-0.2
468
Normal
-0.2
444
Normal
-0.2
498
Normal
-0.2
267
Tumor
-0.2
628
Normal
-0.2
131
Tumor
-0.2
964
Normal
-0.2
916
Normal
-0.2
492
Normal
-0.3
627
Tumor
-0.3
647
Tumor
-0.3
727
Tumor
-0.3
958
Normal
-0.3
228
Normal
-0.3
461
Tumor
-0.3
344
Normal
-0.3
471
Tumor
-0.3
665
Tumor
-0.3
285
Tumor
-0.3
1027
Tumor
-0.3
224
Normal
-0.3
724
Normal
-0.3
686
Normal
-0.3
212
Normal
-0.3
963
Tumor
-0.3
367
Tumor
-0.3
1043
Tumor
-0.3
297
Tumor
-0.4
641
Tumor
-0.4
967
Tumor
-0.4
663
Tumor
-0.4
863
Tumor
-0.4
533
Tumor
-0.4
328
Normal
-0.4
877
Tumor
-0.4
857
Tumor
-0.4
557
Tumor
-0.4
331
Tumor
-0.4
478
Normal
-0.4
881
Tumor
-0.4
191
Tumor
-0.4
227
Tumor
-0.4
671
Tumor
-0.5
851
Tumor
-0.5
145
Tumor
-0.5
823
Tumor
-0.5
536
Normal
-0.5
976
Normal
-0.5
617
Tumor
-0.5
185
Tumor
-0.5
213
Tumor
-0.5
135
Tumor
-0.5
351
Tumor
-0.5
537
Tumor
-0.5
425
Tumor
-0.5
978
Normal
-0.5
813
Tumor
-0.5
983
Tumor
-0.5
721
Tumor
-0.5
261
Tumor
-0.5
411
Tumor
-0.5
526
Normal
-0.6
814
Normal
-0.6
383
Tumor
-0.6
975
Tumor
-0.6
313
Tumor
-0.6
517
Tumor
-0.6
493
Tumor
-0.6
125
Tumor
-0.6
421
Tumor
-0.6
923
Tumor
-0.6
743
Tumor
-0.7
355
Tumor
-0.7
943
Tumor
-0.7
327
Tumor
-0.7
113
Tumor
-0.7
463
Tumor
-0.7
977
Tumor
-0.7
917
Tumor
-0.7
123
Tumor
-0.7
187
Tumor
-0.7
965
Tumor
-0.7
171
Tumor
-0.7
817
Tumor
-0.7
861
Tumor
-0.7
524
Normal
-0.7
953
Tumor
-0.8
161
Tumor
-0.8
697
Tumor
-0.8
755
Tumor
-0.8
661
Tumor
-0.8
527
Tumor
-0.8
223
Tumor
-0.8
525
Tumor
-0.8
283
Tumor
-0.9
491
Tumor
-0.9
635
Tumor
-0.9
451
Tumor
-0.9
713
Tumor
-0.9
487
Tumor
-0.9
545
Tumor
-0.9
447
Tumor
-1.0
497
Tumor
-1.0
257
Tumor
-1.0
937
Tumor
-1.0
375
Tumor
-1.0
413
Tumor
-1.0
455
Tumor
-1.0
865
Tumor
-1.0
387
Tumor
-1.1
523
Tumor
-1.1
573
Tumor
-1.2
395
Tumor
-1.2
385
Tumor
-1.2
467
Tumor
-1.2
427
Tumor
-1.2
925
Tumor
-1.2
311
Tumor
-1.2
343
Tumor
-1.3
535
Tumor
-1.3
957
Tumor
-1.4
211
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
