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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD11 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
14.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MFSD11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.4
957
Tumor
1.7
953
Tumor
1.3
435
Tumor
1.3
257
Tumor
1.1
355
Tumor
1.0
283
Tumor
1.0
741
Tumor
0.9
647
Tumor
0.8
537
Tumor
0.7
965
Tumor
0.7
981
Tumor
0.6
728
Normal
0.6
554
Normal
0.6
482
Normal
0.6
952
Normal
0.6
491
Tumor
0.6
477
Tumor
0.5
617
Tumor
0.5
125
Tumor
0.5
777
Tumor
0.5
462
Normal
0.5
472
Normal
0.5
494
Normal
0.5
553
Tumor
0.5
867
Tumor
0.5
697
Tumor
0.4
421
Tumor
0.4
514
Normal
0.4
516
Normal
0.4
978
Normal
0.4
484
Normal
0.4
534
Normal
0.4
328
Normal
0.4
478
Normal
0.4
525
Tumor
0.4
474
Normal
0.4
923
Tumor
0.4
451
Tumor
0.4
436
Normal
0.4
1042
Normal
0.4
137
Tumor
0.3
1027
Tumor
0.3
1014
Normal
0.3
212
Normal
0.3
546
Normal
0.3
488
Normal
0.3
868
Normal
0.3
432
Normal
0.3
874
Normal
0.3
471
Tumor
0.3
746
Normal
0.3
223
Tumor
0.3
968
Normal
0.3
916
Normal
0.3
363
Tumor
0.3
955
Tumor
0.3
473
Tumor
0.3
526
Normal
0.3
925
Tumor
0.3
481
Tumor
0.3
211
Tumor
0.3
1021
Tumor
0.3
724
Normal
0.3
412
Normal
0.3
224
Normal
0.3
745
Tumor
0.2
455
Tumor
0.2
415
Tumor
0.2
515
Tumor
0.2
917
Tumor
0.2
271
Tumor
0.2
136
Normal
0.2
518
Normal
0.2
862
Normal
0.2
1045
Tumor
0.2
434
Normal
0.2
824
Normal
0.2
448
Normal
0.2
742
Normal
0.2
1013
Tumor
0.2
858
Normal
0.2
958
Normal
0.2
497
Tumor
0.2
956
Normal
0.2
866
Normal
0.1
723
Tumor
0.1
1022
Normal
0.1
954
Normal
0.1
261
Tumor
0.1
984
Normal
0.1
738
Normal
0.1
756
Normal
0.1
864
Normal
0.1
951
Tumor
0.1
918
Normal
0.1
527
Tumor
0.1
492
Normal
0.1
142
Normal
0.1
411
Tumor
0.1
524
Normal
0.1
664
Normal
0.1
535
Tumor
0.1
1032
Normal
0.1
443
Tumor
0.1
364
Normal
0.1
228
Normal
0.1
461
Tumor
0.1
924
Normal
0.1
111
Normal
0.1
536
Normal
0.1
466
Normal
0.0
425
Tumor
0.0
943
Tumor
0.0
464
Normal
0.0
926
Normal
0.0
786
Normal
0.0
1026
Normal
0.0
938
Normal
0.0
616
Normal
0.0
416
Normal
0.0
513
Tumor
0.0
423
Tumor
0.0
428
Normal
0.0
912
Normal
0.0
964
Normal
0.0
123
Tumor
0.0
284
Normal
0.0
1028
Normal
0.0
424
Normal
0.0
884
Normal
0.0
944
Normal
0.0
523
Tumor
0.0
648
Normal
0.0
1016
Normal
0.0
286
Normal
-0.1
1015
Tumor
-0.1
966
Normal
-0.1
1046
Normal
-0.1
755
Tumor
-0.1
483
Tumor
-0.1
131
Tumor
-0.1
882
Normal
-0.1
911
Tumor
-0.1
227
Tumor
-0.1
232
Normal
-0.1
1044
Normal
-0.1
983
Tumor
-0.1
192
Normal
-0.1
356
Normal
-0.1
975
Tumor
-0.1
982
Normal
-0.1
433
Tumor
-0.1
915
Tumor
-0.1
528
Normal
-0.1
146
Normal
-0.2
446
Normal
-0.2
456
Normal
-0.2
665
Tumor
-0.2
852
Normal
-0.2
737
Tumor
-0.2
272
Normal
-0.2
823
Tumor
-0.2
861
Tumor
-0.2
922
Normal
-0.2
878
Normal
-0.2
538
Normal
-0.2
914
Normal
-0.2
1031
Tumor
-0.2
135
Tumor
-0.2
662
Normal
-0.2
258
Normal
-0.2
666
Normal
-0.2
873
Tumor
-0.2
1043
Tumor
-0.2
816
Normal
-0.2
191
Tumor
-0.2
262
Normal
-0.2
124
Normal
-0.2
883
Tumor
-0.2
285
Tumor
-0.3
498
Normal
-0.3
468
Normal
-0.3
126
Normal
-0.3
661
Tumor
-0.3
976
Normal
-0.3
422
Normal
-0.3
196
Normal
-0.3
222
Normal
-0.3
778
Normal
-0.3
431
Tumor
-0.3
447
Tumor
-0.3
913
Tumor
-0.3
444
Normal
-0.3
977
Tumor
-0.3
426
Normal
-0.3
615
Tumor
-0.3
467
Tumor
-0.3
132
Normal
-0.3
545
Tumor
-0.3
921
Tumor
-0.3
213
Tumor
-0.3
785
Tumor
-0.3
877
Tumor
-0.3
145
Tumor
-0.4
1041
Tumor
-0.4
141
Tumor
-0.4
618
Normal
-0.4
517
Tumor
-0.4
663
Tumor
-0.4
218
Normal
-0.4
635
Tumor
-0.4
818
Normal
-0.4
268
Normal
-0.4
698
Normal
-0.4
672
Normal
-0.4
642
Normal
-0.4
851
Tumor
-0.4
744
Normal
-0.4
487
Tumor
-0.4
214
Normal
-0.4
881
Tumor
-0.4
493
Tumor
-0.5
813
Tumor
-0.5
963
Tumor
-0.5
817
Tumor
-0.5
414
Normal
-0.5
815
Tumor
-0.5
114
Normal
-0.5
863
Tumor
-0.5
857
Tumor
-0.5
195
Tumor
-0.5
413
Tumor
-0.5
128
Normal
-0.5
327
Tumor
-0.6
814
Normal
-0.6
967
Tumor
-0.6
452
Normal
-0.6
217
Tumor
-0.6
671
Tumor
-0.6
221
Tumor
-0.6
727
Tumor
-0.6
127
Tumor
-0.7
628
Normal
-0.7
463
Tumor
-0.7
138
Normal
-0.7
465
Tumor
-0.7
627
Tumor
-0.7
636
Normal
-0.7
641
Tumor
-0.7
865
Tumor
-0.7
445
Tumor
-0.8
427
Tumor
-0.8
231
Tumor
-0.8
113
Tumor
-0.8
1025
Tumor
-0.9
743
Tumor
-0.9
267
Tumor
-0.9
937
Tumor
-1.1
112
Tumor
-1.4
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
