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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFFL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
69.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
69.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
52.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
50.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
46.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
39.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
38.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
35.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
32.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
32.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFFL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
56.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
48.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
47.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
43.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
43.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
42.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
26.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
23.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
23.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
365
Tumor
1.5
367
Tumor
1.4
375
Tumor
1.4
383
Tumor
1.2
1021
Tumor
1.2
1041
Tumor
1.2
361
Tumor
1.1
362
Normal
1.1
366
Normal
1.1
217
Tumor
1.1
1025
Tumor
1.0
384
Normal
1.0
192
Normal
1.0
195
Tumor
1.0
913
Tumor
0.9
191
Tumor
0.9
741
Tumor
0.9
1031
Tumor
0.9
222
Normal
0.9
213
Tumor
0.9
368
Normal
0.8
445
Tumor
0.8
218
Normal
0.8
925
Tumor
0.8
937
Tumor
0.8
525
Tumor
0.8
466
Normal
0.8
874
Normal
0.8
883
Tumor
0.8
376
Normal
0.7
196
Normal
0.7
911
Tumor
0.7
573
Tumor
0.7
413
Tumor
0.7
343
Tumor
0.7
477
Tumor
0.7
456
Normal
0.7
451
Tumor
0.7
444
Normal
0.7
358
Normal
0.7
267
Tumor
0.6
221
Tumor
0.6
465
Tumor
0.6
214
Normal
0.6
272
Normal
0.6
817
Tumor
0.6
468
Normal
0.6
132
Normal
0.6
434
Normal
0.6
464
Normal
0.6
431
Tumor
0.5
537
Tumor
0.5
567
Tumor
0.5
433
Tumor
0.5
138
Normal
0.5
342
Normal
0.5
951
Tumor
0.5
268
Normal
0.5
146
Normal
0.5
136
Normal
0.5
446
Normal
0.5
1027
Tumor
0.5
957
Tumor
0.5
443
Tumor
0.5
353
Tumor
0.5
142
Normal
0.5
488
Normal
0.5
187
Tumor
0.4
722
Normal
0.4
432
Normal
0.4
344
Normal
0.4
352
Normal
0.4
262
Normal
0.4
271
Tumor
0.4
471
Tumor
0.4
137
Tumor
0.4
231
Tumor
0.4
921
Tumor
0.4
923
Tumor
0.4
728
Normal
0.4
455
Tumor
0.4
527
Tumor
0.4
258
Normal
0.4
357
Tumor
0.4
436
Normal
0.4
498
Normal
0.4
665
Tumor
0.4
354
Normal
0.4
278
Normal
0.3
914
Normal
0.3
427
Tumor
0.3
467
Tumor
0.3
533
Tumor
0.3
524
Normal
0.3
873
Tumor
0.3
257
Tumor
0.3
1028
Normal
0.3
452
Normal
0.3
861
Tumor
0.3
285
Tumor
0.3
878
Normal
0.3
113
Tumor
0.3
553
Tumor
0.3
627
Tumor
0.3
328
Normal
0.3
135
Tumor
0.3
727
Tumor
0.3
514
Normal
0.3
724
Normal
0.2
912
Normal
0.2
554
Normal
0.2
484
Normal
0.2
261
Tumor
0.2
435
Tumor
0.2
145
Tumor
0.2
851
Tumor
0.2
815
Tumor
0.2
422
Normal
0.2
696
Normal
0.2
685
Tumor
0.2
312
Normal
0.2
574
Normal
0.2
428
Normal
0.2
617
Tumor
0.2
356
Normal
0.2
473
Tumor
0.2
967
Tumor
0.2
864
Normal
0.2
351
Tumor
0.2
686
Normal
0.1
571
Tumor
0.1
286
Normal
0.1
517
Tumor
0.1
944
Normal
0.1
523
Tumor
0.1
298
Normal
0.1
823
Tumor
0.1
123
Tumor
0.1
526
Normal
0.1
227
Tumor
0.1
721
Tumor
0.1
877
Tumor
0.1
494
Normal
0.1
642
Normal
0.1
618
Normal
0.1
661
Tumor
0.1
148
Normal
0.1
396
Normal
0.1
882
Normal
0.1
513
Tumor
0.1
388
Normal
0.1
743
Tumor
0.1
414
Normal
0.1
563
Tumor
0.1
863
Tumor
0.1
867
Tumor
0.1
421
Tumor
0.1
232
Normal
0.1
283
Tumor
0.0
223
Tumor
0.0
112
Tumor
0.0
538
Normal
0.0
635
Tumor
0.0
478
Normal
0.0
557
Tumor
0.0
534
Normal
0.0
1022
Normal
0.0
965
Tumor
0.0
713
Tumor
0.0
545
Tumor
0.0
463
Tumor
0.0
141
Tumor
0.0
568
Normal
0.0
426
Normal
0.0
424
Normal
0.0
395
Tumor
0.0
416
Normal
0.0
481
Tumor
0.0
224
Normal
0.0
284
Normal
0.0
188
Normal
0.0
364
Normal
0.0
978
Normal
0.0
363
Tumor
0.0
341
Tumor
0.0
518
Normal
0.0
314
Normal
0.0
332
Normal
0.0
423
Tumor
0.0
975
Tumor
0.0
977
Tumor
-0.1
391
Tumor
-0.1
716
Normal
-0.1
1032
Normal
-0.1
963
Tumor
-0.1
636
Normal
-0.1
572
Normal
-0.1
394
Normal
-0.1
558
Normal
-0.1
546
Normal
-0.1
172
Normal
-0.1
186
Normal
-0.1
425
Tumor
-0.1
982
Normal
-0.1
386
Normal
-0.1
746
Normal
-0.1
744
Normal
-0.1
228
Normal
-0.1
865
Tumor
-0.1
884
Normal
-0.1
516
Normal
-0.1
943
Tumor
-0.1
392
Normal
-0.1
482
Normal
-0.1
387
Tumor
-0.2
1026
Normal
-0.2
964
Normal
-0.2
1042
Normal
-0.2
564
Normal
-0.2
615
Tumor
-0.2
515
Tumor
-0.2
147
Tumor
-0.2
127
Tumor
-0.2
953
Tumor
-0.2
956
Normal
-0.2
131
Tumor
-0.2
212
Normal
-0.2
868
Normal
-0.2
111
Normal
-0.2
881
Tumor
-0.2
211
Tumor
-0.2
185
Tumor
-0.2
393
Tumor
-0.2
737
Tumor
-0.2
915
Tumor
-0.2
926
Normal
-0.2
1016
Normal
-0.2
385
Tumor
-0.2
171
Tumor
-0.2
535
Tumor
-0.2
916
Normal
-0.2
695
Tumor
-0.2
984
Normal
-0.2
641
Tumor
-0.2
924
Normal
-0.2
756
Normal
-0.2
1014
Normal
-0.2
983
Tumor
-0.2
671
Tumor
-0.3
162
Normal
-0.3
161
Tumor
-0.3
331
Tumor
-0.3
474
Normal
-0.3
952
Normal
-0.3
628
Normal
-0.3
277
Tumor
-0.3
714
Normal
-0.3
461
Tumor
-0.3
866
Normal
-0.3
938
Normal
-0.3
528
Normal
-0.3
125
Tumor
-0.3
311
Tumor
-0.3
862
Normal
-0.3
955
Tumor
-0.3
666
Normal
-0.3
966
Normal
-0.3
124
Normal
-0.3
497
Tumor
-0.3
415
Tumor
-0.3
738
Normal
-0.3
1013
Tumor
-0.3
493
Tumor
-0.3
715
Tumor
-0.4
813
Tumor
-0.4
616
Normal
-0.4
778
Normal
-0.4
672
Normal
-0.4
411
Tumor
-0.4
487
Tumor
-0.4
816
Normal
-0.4
412
Normal
-0.4
472
Normal
-0.4
814
Normal
-0.4
492
Normal
-0.4
857
Tumor
-0.4
128
Normal
-0.4
462
Normal
-0.4
126
Normal
-0.4
723
Tumor
-0.4
786
Normal
-0.4
663
Tumor
-0.5
313
Tumor
-0.5
114
Normal
-0.5
1015
Tumor
-0.5
327
Tumor
-0.5
662
Normal
-0.5
297
Tumor
-0.5
697
Tumor
-0.5
648
Normal
-0.5
954
Normal
-0.5
968
Normal
-0.5
818
Normal
-0.5
976
Normal
-0.5
536
Normal
-0.5
1043
Tumor
-0.5
858
Normal
-0.5
483
Tumor
-0.6
958
Normal
-0.6
918
Normal
-0.6
1046
Normal
-0.6
742
Normal
-0.6
647
Tumor
-0.6
981
Tumor
-0.6
922
Normal
-0.6
755
Tumor
-0.7
917
Tumor
-0.7
745
Tumor
-0.7
1045
Tumor
-0.7
355
Tumor
-0.7
491
Tumor
-0.7
785
Tumor
-0.7
448
Normal
-0.8
1044
Normal
-0.8
852
Normal
-0.8
447
Tumor
-0.8
824
Normal
-0.8
698
Normal
-0.9
664
Normal
-0.9
777
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.