MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.1 nTPM
HPA Brain:27.3 nTPM
GTEx:3.1 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:14.9 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.8
2219 Male, age 76, both hemispheres 34.8
1830 Male, age 51, unknown 28.4
2019 Male, age 18, unknown 28.0
1833 Male, age 53, unknown 27.4
2411 Female, age 72, unknown 27.0
1870 Female, age 42, unknown 24.2
1827 Male, age 72, unknown 23.8
2666 Male, age 74, left hemisphere 23.5
2828 Female, age 72, unknown 23.2
2586 Male, age 75, left hemisphere 18.0
Dorsal raphe nucleus
nTPM: 25.2
2016 Female, age 72, unknown 28.1
2750 Male, age 76, both hemispheres 25.4
2047 Male, age 72, unknown 24.7
1828 Male, age 53, unknown 24.5
2298 Female, age 72, unknown 23.3
Inferior colliculus
nTPM: 25.7
2849 Male, age 72, unknown 26.4
2097 Female, age 72, unknown 26.1
1890 Male, age 53, unknown 25.7
1848 Female, age 42, unknown 24.7
Median raphe nucleus
nTPM: 26.1
2220 Male, age 76, midline 26.1
Periaquaductal grey, anterior
nTPM: 23.6
1947 Male, age 18, unknown 24.9
2502 Female, age 75, unknown 24.2
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 25.2
2464 Female, age 72, unknown 26.5
1831 Male, age 72, unknown 25.2
1840 Male, age 53, unknown 25.0
2850 Male, age 76, both hemispheres 24.2
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 27.8
2140 Male, age 76, both hemispheres 25.3
2053 Male, age 18, unknown 24.0
Pretectal area
nTPM: 23.9
2273 Male, age 74, both hemispheres 27.0
2316 Male, age 76, right hemisphere 27.0
2224 Female, age 72, unknown 25.3
2407 Male, age 75, both hemispheres 23.9
2825 Male, age 18, unknown 23.9
1815 Male, age 53, unknown 23.7
1944 Female, age 72, unknown 23.4
2667 Female, age 75, unknown 22.9
2007 Male, age 72, unknown 22.2
1817 Female, age 42, unknown 21.7
1816 Male, age 51, unknown 21.6
Red nucleus
nTPM: 26.5
2503 Female, age 72, unknown 29.3
1865 Male, age 51, unknown 28.5
1954 Female, age 42, unknown 28.4
2823 Male, age 76, right hemisphere 28.3
1904 Male, age 53, unknown 28.0
1821 Female, age 72, unknown 27.2
2769 Male, age 72, unknown 25.8
2785 Male, age 18, unknown 25.5
2227 Male, age 72, unknown 25.4
2725 Female, age 75, unknown 25.2
2588 Male, age 74, left hemisphere 24.9
2584 Male, age 75, left hemisphere 21.8
Substantia nigra
nTPM: 27.3
2241 Male, age 72, unknown 31.2
2409 Female, age 72, unknown 30.9
2699 Male, age 18, unknown 28.7
1941 Male, age 53, unknown 27.4
2590 Female, age 75, unknown 27.4
1851 Male, age 51, unknown 26.6
1916 Female, age 42, unknown 26.6
2583 Male, age 75, right hemisphere 26.3
2665 Male, age 74, both hemispheres 24.2
1889 Female, age 72, unknown 24.1
Superior colliculus
nTPM: 24.5
1913 Female, age 42, unknown 27.1
1995 Male, age 72, unknown 26.0
1895 Male, age 76, right hemisphere 25.9
2668 Female, age 75, unknown 25.8
1839 Male, age 51, unknown 25.3
2587 Male, age 74, left hemisphere 25.1
2087 Female, age 72, unknown 23.1
1796 Male, age 53, unknown 22.8
2261 Male, age 18, unknown 22.2
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 25.3
2223 Female, age 72, unknown 27.6
2410 Female, age 72, unknown 26.7
1942 Male, age 51, unknown 24.8
1915 Female, age 42, unknown 24.6
2021 Male, age 53, unknown 24.6
2218 Male, age 76, both hemispheres 23.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.1
Samples: 139

Max nTPM: 5.1
Min nTPM: 1.6
Std nTPM: 0.6
Median nTPM: 3.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 5.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 4.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 4.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 4.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 4.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 4.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.1
FF:10158-103A5 76 years, female 39.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 35.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.7
Samples: 4

Max nTPM: 32.6
Min nTPM: 27.1
Sample A Female 32.6
Sample B Female 30.9
Sample C Male 27.1
Sample D Male 32.3
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 34.0
Min nTPM: 31.1
Sample A Female 33.6
Sample B Female 34.0
Sample C Male 31.1
Sample D Male 33.0
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 32.6
Min nTPM: 30.6
Sample B Female 30.6
Sample C Male 31.0
Sample D Male 32.6
Superior colliculi
nTPM: 35.1
Samples: 4

Max nTPM: 37.6
Min nTPM: 33.5
Sample A Female 33.6
Sample B Female 37.6
Sample C Male 33.5
Sample D Male 35.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 15.8
Min nTPM: 14.1
Sample A Male 14.7
Sample B Male 14.8
Sample C Female 15.8
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69288441 Antisense, RP_050331_04_G10, Mouse strain C57BL/6J (56 days, male) 2.4

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