MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.9 nTPM
HPA Brain:101.7 nTPM
GTEx:25.9 nTPM
FANTOM5:272.9 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:18.3 nTPM
Allen mouse:3.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.4
1830 Male, age 51, unknown 111.6
1833 Male, age 53, unknown 101.5
1870 Female, age 42, unknown 99.1
2411 Female, age 72, unknown 95.5
2019 Male, age 18, unknown 94.4
2828 Female, age 72, unknown 80.1
2666 Male, age 74, left hemisphere 77.1
2219 Male, age 76, both hemispheres 72.2
1827 Male, age 72, unknown 67.8
2586 Male, age 75, left hemisphere 64.7
Dorsal raphe nucleus
nTPM: 70.8
2750 Male, age 76, both hemispheres 107.1
2047 Male, age 72, unknown 70.1
1828 Male, age 53, unknown 66.6
2016 Female, age 72, unknown 61.2
2298 Female, age 72, unknown 48.9
Inferior colliculus
nTPM: 69.4
2849 Male, age 72, unknown 78.7
1848 Female, age 42, unknown 74.2
1890 Male, age 53, unknown 64.4
2097 Female, age 72, unknown 60.3
Median raphe nucleus
nTPM: 87.5
2220 Male, age 76, midline 87.5
Periaquaductal grey, anterior
nTPM: 69.7
1947 Male, age 18, unknown 79.7
2502 Female, age 75, unknown 70.4
1795 Male, age 51, unknown 59.0
Periaquaductal grey, dorsal
nTPM: 59.7
2464 Female, age 72, unknown 68.8
2850 Male, age 76, both hemispheres 61.6
1831 Male, age 72, unknown 60.6
1840 Male, age 53, unknown 47.8
Periaquaductal grey, lateral
nTPM: 58.8
2053 Male, age 18, unknown 64.5
2272 Male, age 74, both hemispheres 56.9
2140 Male, age 76, both hemispheres 55.2
Pretectal area
nTPM: 69.3
2407 Male, age 75, both hemispheres 80.2
1817 Female, age 42, unknown 79.9
2316 Male, age 76, right hemisphere 79.2
2667 Female, age 75, unknown 78.4
1815 Male, age 53, unknown 78.0
2007 Male, age 72, unknown 71.2
2825 Male, age 18, unknown 70.3
2224 Female, age 72, unknown 60.6
1944 Female, age 72, unknown 58.5
2273 Male, age 74, both hemispheres 58.4
1816 Male, age 51, unknown 47.0
Red nucleus
nTPM: 101.7
1865 Male, age 51, unknown 128.5
1904 Male, age 53, unknown 120.5
2823 Male, age 76, right hemisphere 112.3
2785 Male, age 18, unknown 106.1
2503 Female, age 72, unknown 105.9
2588 Male, age 74, left hemisphere 102.9
1821 Female, age 72, unknown 100.7
2769 Male, age 72, unknown 96.6
1954 Female, age 42, unknown 95.2
2227 Male, age 72, unknown 94.2
2725 Female, age 75, unknown 81.0
2584 Male, age 75, left hemisphere 77.1
Substantia nigra
nTPM: 62.4
2583 Male, age 75, right hemisphere 78.1
1889 Female, age 72, unknown 73.8
2409 Female, age 72, unknown 71.6
1941 Male, age 53, unknown 69.2
1851 Male, age 51, unknown 68.6
2590 Female, age 75, unknown 62.6
2241 Male, age 72, unknown 55.7
2699 Male, age 18, unknown 49.5
1916 Female, age 42, unknown 48.6
2665 Male, age 74, both hemispheres 46.2
Superior colliculus
nTPM: 76.9
1913 Female, age 42, unknown 99.9
1995 Male, age 72, unknown 93.7
1895 Male, age 76, right hemisphere 92.8
2587 Male, age 74, left hemisphere 79.2
2668 Female, age 75, unknown 79.1
1839 Male, age 51, unknown 76.9
1796 Male, age 53, unknown 64.5
2664 Male, age 75, both hemispheres 64.1
2261 Male, age 18, unknown 61.6
2087 Female, age 72, unknown 57.5
Ventral tegmental area
nTPM: 75.2
2223 Female, age 72, unknown 111.6
2410 Female, age 72, unknown 88.8
2218 Male, age 76, both hemispheres 68.0
1942 Male, age 51, unknown 65.2
2021 Male, age 53, unknown 63.5
1915 Female, age 42, unknown 54.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 25.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.9
Samples: 139

Max nTPM: 62.7
Min nTPM: 7.2
Std nTPM: 12.2
Median nTPM: 22.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 62.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 60.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 59.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 59.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 56.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 56.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 55.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 55.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 53.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 272.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 272.9
FF:10158-103A5 76 years, female 272.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 64.0
Min nTPM: 27.1
Sample A Female 35.0
Sample B Female 27.1
Sample C Male 34.6
Sample D Male 64.0
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 78.5
Min nTPM: 36.4
Sample A Female 78.5
Sample B Female 36.4
Sample C Male 59.0
Sample D Male 46.6
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 36.3
Min nTPM: 27.3
Sample B Female 36.3
Sample C Male 27.3
Sample D Male 32.3
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 57.0
Min nTPM: 20.2
Sample A Female 40.5
Sample B Female 20.2
Sample C Male 52.0
Sample D Male 57.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.4
Samples: 4

Max nTPM: 21.5
Min nTPM: 14.3
Sample A Male 14.3
Sample B Male 18.2
Sample C Female 21.5
Sample D Female 19.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
71358651 Antisense, RP_050725_03_F10, Mouse strain C57BL/6J (56 days, male) 3.8
68844851 Antisense, RP_050222_02_E11, Mouse strain C57BL/6J (56 days, male) 3.5

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