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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUPT16H is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
48.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
33.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUPT16H is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
49.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
41.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
29.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
1.2
965
Tumor
1.2
483
Tumor
1.2
865
Tumor
1.1
661
Tumor
1.1
497
Tumor
1.0
967
Tumor
1.0
411
Tumor
1.0
743
Tumor
1.0
951
Tumor
1.0
957
Tumor
0.9
523
Tumor
0.9
131
Tumor
0.9
285
Tumor
0.8
1013
Tumor
0.8
357
Tumor
0.8
355
Tumor
0.8
635
Tumor
0.8
427
Tumor
0.7
953
Tumor
0.7
1031
Tumor
0.7
425
Tumor
0.7
211
Tumor
0.7
385
Tumor
0.7
537
Tumor
0.7
535
Tumor
0.7
1027
Tumor
0.7
525
Tumor
0.7
465
Tumor
0.6
375
Tumor
0.6
112
Tumor
0.6
477
Tumor
0.6
923
Tumor
0.6
671
Tumor
0.6
283
Tumor
0.6
727
Tumor
0.6
737
Tumor
0.6
685
Tumor
0.6
943
Tumor
0.6
413
Tumor
0.6
227
Tumor
0.6
527
Tumor
0.5
813
Tumor
0.5
533
Tumor
0.5
445
Tumor
0.5
983
Tumor
0.5
213
Tumor
0.5
815
Tumor
0.5
493
Tumor
0.5
331
Tumor
0.5
447
Tumor
0.5
257
Tumor
0.5
975
Tumor
0.5
433
Tumor
0.5
817
Tumor
0.5
977
Tumor
0.5
695
Tumor
0.5
221
Tumor
0.5
463
Tumor
0.5
277
Tumor
0.5
343
Tumor
0.5
877
Tumor
0.4
1015
Tumor
0.4
161
Tumor
0.4
367
Tumor
0.4
391
Tumor
0.4
387
Tumor
0.4
127
Tumor
0.4
814
Normal
0.4
125
Tumor
0.4
545
Tumor
0.4
351
Tumor
0.4
491
Tumor
0.3
921
Tumor
0.3
123
Tumor
0.3
271
Tumor
0.3
395
Tumor
0.3
917
Tumor
0.3
741
Tumor
0.3
881
Tumor
0.3
267
Tumor
0.3
487
Tumor
0.3
467
Tumor
0.3
513
Tumor
0.2
431
Tumor
0.2
745
Tumor
0.2
423
Tumor
0.2
663
Tumor
0.2
135
Tumor
0.2
141
Tumor
0.2
1021
Tumor
0.2
647
Tumor
0.2
883
Tumor
0.2
455
Tumor
0.2
471
Tumor
0.2
517
Tumor
0.2
185
Tumor
0.2
641
Tumor
0.2
863
Tumor
0.2
297
Tumor
0.1
553
Tumor
0.1
571
Tumor
0.1
311
Tumor
0.1
461
Tumor
0.1
573
Tumor
0.1
777
Tumor
0.1
715
Tumor
0.1
873
Tumor
0.1
861
Tumor
0.1
963
Tumor
0.0
557
Tumor
0.0
435
Tumor
0.0
1025
Tumor
0.0
415
Tumor
0.0
755
Tumor
0.0
937
Tumor
0.0
1045
Tumor
0.0
421
Tumor
0.0
363
Tumor
0.0
911
Tumor
0.0
361
Tumor
0.0
567
Tumor
0.0
473
Tumor
0.0
867
Tumor
0.0
665
Tumor
0.0
515
Tumor
0.0
724
Normal
-0.1
697
Tumor
-0.1
383
Tumor
-0.1
217
Tumor
-0.1
443
Tumor
-0.1
492
Normal
-0.1
823
Tumor
-0.1
393
Tumor
-0.1
721
Tumor
-0.1
187
Tumor
-0.1
113
Tumor
-0.1
498
Normal
-0.1
524
Normal
-0.1
563
Tumor
-0.1
857
Tumor
-0.1
615
Tumor
-0.1
538
Normal
-0.1
536
Normal
-0.2
223
Tumor
-0.2
195
Tumor
-0.2
451
Tumor
-0.2
915
Tumor
-0.2
224
Normal
-0.2
191
Tumor
-0.2
981
Tumor
-0.2
785
Tumor
-0.2
261
Tumor
-0.2
327
Tumor
-0.2
478
Normal
-0.2
851
Tumor
-0.2
627
Tumor
-0.2
365
Tumor
-0.2
1041
Tumor
-0.2
966
Normal
-0.2
617
Tumor
-0.2
713
Tumor
-0.2
913
Tumor
-0.2
481
Tumor
-0.3
434
Normal
-0.3
444
Normal
-0.3
192
Normal
-0.3
978
Normal
-0.3
516
Normal
-0.3
341
Tumor
-0.3
744
Normal
-0.3
1043
Tumor
-0.3
212
Normal
-0.3
488
Normal
-0.3
268
Normal
-0.3
925
Tumor
-0.3
284
Normal
-0.3
984
Normal
-0.3
353
Tumor
-0.4
976
Normal
-0.4
954
Normal
-0.4
534
Normal
-0.4
384
Normal
-0.4
554
Normal
-0.4
964
Normal
-0.4
231
Tumor
-0.4
188
Normal
-0.4
228
Normal
-0.4
1044
Normal
-0.4
916
Normal
-0.4
171
Tumor
-0.4
314
Normal
-0.4
672
Normal
-0.4
1014
Normal
-0.4
1028
Normal
-0.4
1026
Normal
-0.4
484
Normal
-0.4
386
Normal
-0.4
482
Normal
-0.5
958
Normal
-0.5
546
Normal
-0.5
147
Tumor
-0.5
852
Normal
-0.5
955
Tumor
-0.5
344
Normal
-0.5
364
Normal
-0.5
1046
Normal
-0.5
874
Normal
-0.5
286
Normal
-0.5
494
Normal
-0.5
924
Normal
-0.5
146
Normal
-0.5
922
Normal
-0.5
866
Normal
-0.5
518
Normal
-0.5
448
Normal
-0.5
142
Normal
-0.5
426
Normal
-0.5
878
Normal
-0.5
145
Tumor
-0.5
918
Normal
-0.5
956
Normal
-0.5
352
Normal
-0.5
416
Normal
-0.5
424
Normal
-0.5
528
Normal
-0.5
968
Normal
-0.5
456
Normal
-0.5
472
Normal
-0.5
1042
Normal
-0.5
628
Normal
-0.5
422
Normal
-0.5
312
Normal
-0.5
412
Normal
-0.5
1016
Normal
-0.5
396
Normal
-0.5
428
Normal
-0.5
464
Normal
-0.5
514
Normal
-0.5
468
Normal
-0.5
328
Normal
-0.5
474
Normal
-0.5
126
Normal
-0.5
388
Normal
-0.5
982
Normal
-0.5
432
Normal
-0.5
466
Normal
-0.5
462
Normal
-0.5
686
Normal
-0.5
818
Normal
-0.5
332
Normal
-0.5
864
Normal
-0.5
714
Normal
-0.5
696
Normal
-0.5
738
Normal
-0.5
778
Normal
-0.5
526
Normal
-0.5
262
Normal
-0.6
298
Normal
-0.6
414
Normal
-0.6
926
Normal
-0.6
858
Normal
-0.6
664
Normal
-0.6
728
Normal
-0.6
558
Normal
-0.6
786
Normal
-0.6
636
Normal
-0.6
666
Normal
-0.6
944
Normal
-0.6
218
Normal
-0.6
912
Normal
-0.6
952
Normal
-0.6
882
Normal
-0.6
392
Normal
-0.6
742
Normal
-0.6
862
Normal
-0.6
368
Normal
-0.6
278
Normal
-0.6
394
Normal
-0.6
698
Normal
-0.6
716
Normal
-0.6
662
Normal
-0.6
1032
Normal
-0.6
137
Tumor
-0.6
574
Normal
-0.6
868
Normal
-0.6
616
Normal
-0.6
356
Normal
-0.6
362
Normal
-0.6
824
Normal
-0.6
756
Normal
-0.6
884
Normal
-0.6
138
Normal
-0.6
124
Normal
-0.6
148
Normal
-0.6
376
Normal
-0.6
816
Normal
-0.6
572
Normal
-0.6
722
Normal
-0.6
938
Normal
-0.6
272
Normal
-0.6
446
Normal
-0.6
746
Normal
-0.7
618
Normal
-0.7
162
Normal
-0.7
354
Normal
-0.7
214
Normal
-0.7
1022
Normal
-0.7
452
Normal
-0.7
723
Tumor
-0.7
642
Normal
-0.7
366
Normal
-0.7
914
Normal
-0.7
342
Normal
-0.7
186
Normal
-0.7
172
Normal
-0.7
222
Normal
-0.7
564
Normal
-0.7
196
Normal
-0.7
114
Normal
-0.7
111
Normal
-0.7
128
Normal
-0.7
232
Normal
-0.7
568
Normal
-0.7
358
Normal
-0.7
436
Normal
-0.7
648
Normal
-0.7
258
Normal
-0.8
136
Normal
-0.8
132
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
