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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HECTD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
79.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
68.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
65.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
46.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
43.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
39.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
38.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
32.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
32.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
31.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
29.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
29.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
28.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
27.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
23.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
21.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
19.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
15.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HECTD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
231
Samples
Sample
Description
TPM
DO45117
0 years, female, NA, stage:2, dead, 1110 days
58.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
38.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
23.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
0.7
937
Tumor
0.6
745
Tumor
0.5
955
Tumor
0.5
455
Tumor
0.5
426
Normal
0.4
851
Tumor
0.4
411
Tumor
0.4
664
Normal
0.4
218
Normal
0.4
344
Normal
0.4
1027
Tumor
0.4
145
Tumor
0.4
342
Normal
0.4
186
Normal
0.3
697
Tumor
0.3
957
Tumor
0.3
448
Normal
0.3
1025
Tumor
0.3
636
Normal
0.3
952
Normal
0.3
617
Tumor
0.3
113
Tumor
0.3
755
Tumor
0.3
464
Normal
0.3
912
Normal
0.3
1028
Normal
0.3
358
Normal
0.3
222
Normal
0.3
778
Normal
0.3
698
Normal
0.3
648
Normal
0.3
297
Tumor
0.3
217
Tumor
0.3
662
Normal
0.3
368
Normal
0.3
298
Normal
0.3
162
Normal
0.3
746
Normal
0.3
742
Normal
0.3
814
Normal
0.3
127
Tumor
0.3
467
Tumor
0.3
414
Normal
0.3
267
Tumor
0.2
258
Normal
0.2
518
Normal
0.2
618
Normal
0.2
111
Normal
0.2
214
Normal
0.2
286
Normal
0.2
858
Normal
0.2
434
Normal
0.2
786
Normal
0.2
862
Normal
0.2
926
Normal
0.2
666
Normal
0.2
172
Normal
0.2
554
Normal
0.2
982
Normal
0.2
756
Normal
0.2
412
Normal
0.2
114
Normal
0.2
1043
Tumor
0.2
482
Normal
0.2
354
Normal
0.2
535
Tumor
0.2
196
Normal
0.2
148
Normal
0.2
635
Tumor
0.2
938
Normal
0.2
422
Normal
0.2
462
Normal
0.2
481
Tumor
0.2
546
Normal
0.2
1046
Normal
0.2
125
Tumor
0.2
628
Normal
0.2
353
Tumor
0.2
868
Normal
0.2
738
Normal
0.2
824
Normal
0.2
484
Normal
0.2
922
Normal
0.2
456
Normal
0.2
1026
Normal
0.2
728
Normal
0.2
1022
Normal
0.2
452
Normal
0.2
364
Normal
0.2
722
Normal
0.2
1044
Normal
0.2
817
Tumor
0.2
332
Normal
0.2
672
Normal
0.2
472
Normal
0.2
723
Tumor
0.2
966
Normal
0.2
428
Normal
0.2
466
Normal
0.2
128
Normal
0.2
642
Normal
0.2
696
Normal
0.2
528
Normal
0.2
136
Normal
0.2
944
Normal
0.2
818
Normal
0.2
975
Tumor
0.2
924
Normal
0.2
968
Normal
0.2
534
Normal
0.2
392
Normal
0.2
146
Normal
0.2
488
Normal
0.2
1016
Normal
0.2
124
Normal
0.2
394
Normal
0.2
956
Normal
0.2
882
Normal
0.2
432
Normal
0.2
446
Normal
0.2
436
Normal
0.2
232
Normal
0.2
132
Normal
0.2
431
Tumor
0.2
188
Normal
0.2
262
Normal
0.2
713
Tumor
0.2
647
Tumor
0.2
468
Normal
0.2
272
Normal
0.2
523
Tumor
0.2
557
Tumor
0.2
356
Normal
0.2
228
Normal
0.2
191
Tumor
0.2
716
Normal
0.2
126
Normal
0.1
1013
Tumor
0.1
616
Normal
0.1
714
Normal
0.1
641
Tumor
0.1
195
Tumor
0.1
914
Normal
0.1
376
Normal
0.1
328
Normal
0.1
524
Normal
0.1
352
Normal
0.1
564
Normal
0.1
135
Tumor
0.1
424
Normal
0.1
445
Tumor
0.1
142
Normal
0.1
314
Normal
0.1
268
Normal
0.1
278
Normal
0.1
396
Normal
0.1
568
Normal
0.1
744
Normal
0.1
526
Normal
0.1
474
Normal
0.1
516
Normal
0.1
884
Normal
0.1
918
Normal
0.1
866
Normal
0.1
213
Tumor
0.1
185
Tumor
0.1
984
Normal
0.1
138
Normal
0.1
816
Normal
0.1
514
Normal
0.1
923
Tumor
0.1
953
Tumor
0.1
686
Normal
0.1
867
Tumor
0.1
964
Normal
0.1
864
Normal
0.1
366
Normal
0.1
536
Normal
0.1
553
Tumor
0.1
388
Normal
0.1
491
Tumor
0.1
1014
Normal
0.1
743
Tumor
0.1
386
Normal
0.1
416
Normal
0.1
1045
Tumor
0.1
963
Tumor
0.1
857
Tumor
0.1
958
Normal
0.1
385
Tumor
0.1
362
Normal
0.1
1032
Normal
0.1
465
Tumor
0.1
976
Normal
0.1
874
Normal
0.1
954
Normal
0.1
1042
Normal
0.1
978
Normal
0.1
574
Normal
0.1
724
Normal
0.1
112
Tumor
0.1
881
Tumor
0.1
873
Tumor
0.1
387
Tumor
0.1
192
Normal
0.0
413
Tumor
0.0
497
Tumor
0.0
312
Normal
0.0
187
Tumor
0.0
917
Tumor
0.0
878
Normal
0.0
967
Tumor
0.0
538
Normal
0.0
478
Normal
0.0
284
Normal
0.0
212
Normal
0.0
285
Tumor
0.0
492
Normal
0.0
223
Tumor
0.0
311
Tumor
0.0
327
Tumor
0.0
477
Tumor
0.0
572
Normal
0.0
224
Normal
0.0
221
Tumor
0.0
355
Tumor
0.0
943
Tumor
0.0
663
Tumor
0.0
494
Normal
0.0
721
Tumor
0.0
665
Tumor
0.0
451
Tumor
0.0
852
Normal
0.0
393
Tumor
0.0
525
Tumor
0.0
951
Tumor
0.0
211
Tumor
0.0
715
Tumor
0.0
421
Tumor
0.0
916
Normal
0.0
861
Tumor
0.0
487
Tumor
0.0
483
Tumor
0.0
443
Tumor
0.0
141
Tumor
0.0
384
Normal
0.0
498
Normal
0.0
444
Normal
0.0
361
Tumor
0.0
123
Tumor
0.0
415
Tumor
0.0
493
Tumor
0.0
558
Normal
0.0
131
Tumor
0.0
433
Tumor
0.0
527
Tumor
0.0
471
Tumor
-0.1
231
Tumor
-0.1
515
Tumor
-0.1
395
Tumor
-0.1
915
Tumor
-0.1
983
Tumor
-0.1
981
Tumor
-0.1
823
Tumor
-0.1
257
Tumor
-0.1
161
Tumor
-0.1
461
Tumor
-0.1
473
Tumor
-0.1
911
Tumor
-0.1
627
Tumor
-0.1
283
Tumor
-0.1
785
Tumor
-0.1
921
Tumor
-0.1
271
Tumor
-0.1
1015
Tumor
-0.1
925
Tumor
-0.1
777
Tumor
-0.1
343
Tumor
-0.1
1031
Tumor
-0.1
423
Tumor
-0.1
563
Tumor
-0.1
671
Tumor
-0.1
227
Tumor
-0.1
367
Tumor
-0.1
815
Tumor
-0.1
375
Tumor
-0.1
447
Tumor
-0.1
341
Tumor
-0.2
695
Tumor
-0.2
261
Tumor
-0.2
425
Tumor
-0.2
147
Tumor
-0.2
661
Tumor
-0.2
137
Tumor
-0.2
427
Tumor
-0.2
357
Tumor
-0.2
545
Tumor
-0.2
1041
Tumor
-0.2
391
Tumor
-0.2
435
Tumor
-0.2
331
Tumor
-0.2
965
Tumor
-0.2
913
Tumor
-0.2
883
Tumor
-0.2
537
Tumor
-0.2
977
Tumor
-0.2
863
Tumor
-0.2
741
Tumor
-0.2
513
Tumor
-0.3
383
Tumor
-0.3
365
Tumor
-0.3
363
Tumor
-0.3
313
Tumor
-0.3
463
Tumor
-0.3
277
Tumor
-0.3
567
Tumor
-0.3
573
Tumor
-0.3
533
Tumor
-0.3
727
Tumor
-0.4
737
Tumor
-0.4
615
Tumor
-0.4
171
Tumor
-0.4
517
Tumor
-0.4
877
Tumor
-0.4
571
Tumor
-0.4
865
Tumor
-0.4
1021
Tumor
-0.5
351
Tumor
-0.5
685
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
