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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCFD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
39.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCFD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.6
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
64.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
55.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
40.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
33.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
33.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
30.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
26.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
24.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
24.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
20.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
0.7
445
Tumor
0.6
227
Tumor
0.6
527
Tumor
0.6
1027
Tumor
0.5
745
Tumor
0.5
635
Tumor
0.5
135
Tumor
0.5
937
Tumor
0.5
451
Tumor
0.4
1015
Tumor
0.4
863
Tumor
0.4
921
Tumor
0.4
112
Tumor
0.4
727
Tumor
0.4
327
Tumor
0.4
113
Tumor
0.4
865
Tumor
0.3
951
Tumor
0.3
741
Tumor
0.3
615
Tumor
0.3
353
Tumor
0.3
431
Tumor
0.3
481
Tumor
0.3
221
Tumor
0.3
271
Tumor
0.3
483
Tumor
0.3
357
Tumor
0.3
857
Tumor
0.3
617
Tumor
0.3
1025
Tumor
0.3
487
Tumor
0.2
815
Tumor
0.2
365
Tumor
0.2
913
Tumor
0.2
368
Normal
0.2
137
Tumor
0.2
553
Tumor
0.2
721
Tumor
0.2
755
Tumor
0.2
383
Tumor
0.2
413
Tumor
0.2
267
Tumor
0.2
285
Tumor
0.2
697
Tumor
0.2
636
Normal
0.2
223
Tumor
0.2
232
Normal
0.2
911
Tumor
0.2
272
Normal
0.2
145
Tumor
0.2
463
Tumor
0.2
983
Tumor
0.2
191
Tumor
0.2
185
Tumor
0.2
427
Tumor
0.2
641
Tumor
0.2
426
Normal
0.2
981
Tumor
0.2
258
Normal
0.2
127
Tumor
0.2
1045
Tumor
0.1
866
Normal
0.1
111
Normal
0.1
661
Tumor
0.1
217
Tumor
0.1
262
Normal
0.1
557
Tumor
0.1
261
Tumor
0.1
714
Normal
0.1
446
Normal
0.1
387
Tumor
0.1
468
Normal
0.1
867
Tumor
0.1
558
Normal
0.1
868
Normal
0.1
124
Normal
0.1
392
Normal
0.1
187
Tumor
0.1
648
Normal
0.1
955
Tumor
0.1
471
Tumor
0.1
257
Tumor
0.1
977
Tumor
0.1
467
Tumor
0.1
665
Tumor
0.1
218
Normal
0.1
728
Normal
0.1
376
Normal
0.1
786
Normal
0.1
564
Normal
0.1
528
Normal
0.1
915
Tumor
0.1
148
Normal
0.1
414
Normal
0.1
952
Normal
0.1
923
Tumor
0.1
362
Normal
0.1
627
Tumor
0.1
354
Normal
0.1
722
Normal
0.1
568
Normal
0.1
186
Normal
0.1
1043
Tumor
0.1
533
Tumor
0.1
466
Normal
0.1
642
Normal
0.1
1041
Tumor
0.1
696
Normal
0.1
813
Tumor
0.1
873
Tumor
0.1
162
Normal
0.1
447
Tumor
0.1
616
Normal
0.1
385
Tumor
0.1
126
Normal
0.1
195
Tumor
0.1
188
Normal
0.1
1021
Tumor
0.1
738
Normal
0.1
132
Normal
0.1
523
Tumor
0.1
214
Normal
0.1
268
Normal
0.1
128
Normal
0.1
922
Normal
0.1
526
Normal
0.1
456
Normal
0.1
1013
Tumor
0.1
984
Normal
0.1
421
Tumor
0.1
742
Normal
0.1
212
Normal
0.1
436
Normal
0.1
452
Normal
0.1
462
Normal
0.1
286
Normal
0.1
944
Normal
0.1
138
Normal
0.1
514
Normal
0.1
967
Tumor
0.1
968
Normal
0.1
424
Normal
0.0
114
Normal
0.0
284
Normal
0.0
344
Normal
0.0
737
Tumor
0.0
356
Normal
0.0
918
Normal
0.0
914
Normal
0.0
746
Normal
0.0
664
Normal
0.0
464
Normal
0.0
363
Tumor
0.0
136
Normal
0.0
884
Normal
0.0
685
Tumor
0.0
572
Normal
0.0
428
Normal
0.0
864
Normal
0.0
618
Normal
0.0
422
Normal
0.0
954
Normal
0.0
393
Tumor
0.0
312
Normal
0.0
778
Normal
0.0
964
Normal
0.0
477
Tumor
0.0
358
Normal
0.0
395
Tumor
0.0
713
Tumor
0.0
396
Normal
0.0
563
Tumor
0.0
1046
Normal
0.0
536
Normal
0.0
448
Normal
0.0
1028
Normal
0.0
814
Normal
0.0
352
Normal
0.0
966
Normal
0.0
823
Tumor
0.0
473
Tumor
0.0
724
Normal
0.0
956
Normal
0.0
161
Tumor
0.0
434
Normal
0.0
412
Normal
0.0
978
Normal
0.0
912
Normal
0.0
874
Normal
0.0
366
Normal
0.0
663
Tumor
0.0
482
Normal
0.0
147
Tumor
0.0
852
Normal
0.0
777
Tumor
0.0
1014
Normal
0.0
361
Tumor
0.0
313
Tumor
0.0
513
Tumor
0.0
435
Tumor
0.0
816
Normal
0.0
488
Normal
0.0
386
Normal
0.0
222
Normal
0.0
228
Normal
0.0
851
Tumor
0.0
1032
Normal
0.0
926
Normal
0.0
716
Normal
0.0
1026
Normal
0.0
461
Tumor
0.0
982
Normal
0.0
192
Normal
0.0
686
Normal
0.0
862
Normal
0.0
743
Tumor
0.0
518
Normal
0.0
172
Normal
0.0
328
Normal
0.0
142
Normal
0.0
878
Normal
0.0
196
Normal
0.0
342
Normal
0.0
574
Normal
0.0
861
Tumor
0.0
388
Normal
0.0
125
Tumor
0.0
472
Normal
0.0
141
Tumor
0.0
881
Tumor
0.0
938
Normal
0.0
433
Tumor
0.0
444
Normal
0.0
975
Tumor
0.0
332
Normal
0.0
432
Normal
0.0
628
Normal
0.0
723
Tumor
0.0
817
Tumor
0.0
824
Normal
0.0
1022
Normal
0.0
343
Tumor
0.0
1016
Normal
-0.1
756
Normal
-0.1
497
Tumor
-0.1
416
Normal
-0.1
662
Normal
-0.1
1031
Tumor
-0.1
554
Normal
-0.1
311
Tumor
-0.1
415
Tumor
-0.1
883
Tumor
-0.1
314
Normal
-0.1
298
Normal
-0.1
1044
Normal
-0.1
976
Normal
-0.1
672
Normal
-0.1
698
Normal
-0.1
695
Tumor
-0.1
924
Normal
-0.1
231
Tumor
-0.1
455
Tumor
-0.1
211
Tumor
-0.1
546
Normal
-0.1
384
Normal
-0.1
375
Tumor
-0.1
666
Normal
-0.1
492
Normal
-0.1
146
Normal
-0.1
278
Normal
-0.1
213
Tumor
-0.1
494
Normal
-0.1
131
Tumor
-0.1
474
Normal
-0.1
535
Tumor
-0.1
916
Normal
-0.1
493
Tumor
-0.1
283
Tumor
-0.1
965
Tumor
-0.1
958
Normal
-0.1
443
Tumor
-0.1
391
Tumor
-0.1
394
Normal
-0.1
524
Normal
-0.1
498
Normal
-0.1
491
Tumor
-0.1
882
Normal
-0.1
224
Normal
-0.1
818
Normal
-0.1
1042
Normal
-0.1
785
Tumor
-0.1
537
Tumor
-0.1
484
Normal
-0.1
364
Normal
-0.1
858
Normal
-0.1
538
Normal
-0.1
411
Tumor
-0.1
515
Tumor
-0.1
963
Tumor
-0.1
534
Normal
-0.1
744
Normal
-0.2
715
Tumor
-0.2
877
Tumor
-0.2
297
Tumor
-0.2
516
Normal
-0.2
647
Tumor
-0.2
423
Tumor
-0.2
331
Tumor
-0.2
925
Tumor
-0.2
425
Tumor
-0.2
478
Normal
-0.2
277
Tumor
-0.2
171
Tumor
-0.2
917
Tumor
-0.3
571
Tumor
-0.3
351
Tumor
-0.3
943
Tumor
-0.3
525
Tumor
-0.3
567
Tumor
-0.3
953
Tumor
-0.3
573
Tumor
-0.4
355
Tumor
-0.4
545
Tumor
-0.4
517
Tumor
-0.4
367
Tumor
-0.5
957
Tumor
-0.5
671
Tumor
-0.5
341
Tumor
-0.6
465
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
