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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPAG7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
127.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
120.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
113.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
111.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
92.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
89.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
88.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
86.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
86.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
84.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
83.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
79.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
74.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
73.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
71.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
67.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
66.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
65.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
64.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
62.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
62.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
61.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
61.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
61.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
60.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
59.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
59.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
58.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
56.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
56.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
56.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
56.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
56.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
54.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
53.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
53.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
53.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
53.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
53.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
53.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
52.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
52.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
52.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
52.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
51.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
50.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
50.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
50.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
50.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
49.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
49.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
48.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
48.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
47.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
47.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
46.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
46.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
46.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
46.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
45.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
45.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
45.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
44.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
43.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
43.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
43.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
43.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
43.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
43.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
42.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
42.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
42.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
41.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
41.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
40.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
40.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
40.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
40.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
39.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
39.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
38.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
38.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
38.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
37.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
37.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
36.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
34.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
33.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
33.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
32.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
31.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
30.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
29.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
27.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
26.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPAG7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.5
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
104.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
83.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
81.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
76.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
74.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
73.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
68.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
62.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
59.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
56.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
55.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
54.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
52.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
48.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
47.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
45.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
45.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
44.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
44.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
44.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
44.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
42.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
40.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
39.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
37.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
37.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
35.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
33.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
33.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.3
131
Tumor
1.3
715
Tumor
1.2
553
Tumor
1.0
695
Tumor
0.9
227
Tumor
0.8
545
Tumor
0.8
815
Tumor
0.7
283
Tumor
0.6
924
Normal
0.6
478
Normal
0.5
724
Normal
0.5
145
Tumor
0.5
413
Tumor
0.5
737
Tumor
0.5
696
Normal
0.5
937
Tumor
0.5
463
Tumor
0.4
716
Normal
0.4
447
Tumor
0.4
877
Tumor
0.4
915
Tumor
0.4
912
Normal
0.4
1031
Tumor
0.4
721
Tumor
0.4
572
Normal
0.4
462
Normal
0.4
395
Tumor
0.4
975
Tumor
0.4
878
Normal
0.4
228
Normal
0.4
865
Tumor
0.4
755
Tumor
0.4
261
Tumor
0.4
882
Normal
0.4
472
Normal
0.4
431
Tumor
0.4
984
Normal
0.4
452
Normal
0.3
698
Normal
0.3
568
Normal
0.3
983
Tumor
0.3
864
Normal
0.3
742
Normal
0.3
467
Tumor
0.3
135
Tumor
0.3
546
Normal
0.3
746
Normal
0.3
922
Normal
0.3
866
Normal
0.3
482
Normal
0.3
1014
Normal
0.3
881
Tumor
0.3
686
Normal
0.3
481
Tumor
0.3
557
Tumor
0.3
958
Normal
0.3
271
Tumor
0.3
884
Normal
0.3
284
Normal
0.3
954
Normal
0.3
537
Tumor
0.3
982
Normal
0.3
536
Normal
0.2
664
Normal
0.2
516
Normal
0.2
518
Normal
0.2
113
Tumor
0.2
857
Tumor
0.2
1016
Normal
0.2
286
Normal
0.2
484
Normal
0.2
232
Normal
0.2
916
Normal
0.2
298
Normal
0.2
355
Tumor
0.2
914
Normal
0.2
868
Normal
0.2
1043
Tumor
0.2
635
Tumor
0.2
272
Normal
0.2
918
Normal
0.2
641
Tumor
0.2
978
Normal
0.2
571
Tumor
0.2
858
Normal
0.2
966
Normal
0.2
524
Normal
0.2
111
Normal
0.2
926
Normal
0.2
647
Tumor
0.2
448
Normal
0.2
938
Normal
0.2
823
Tumor
0.2
814
Normal
0.2
862
Normal
0.2
211
Tumor
0.2
498
Normal
0.2
262
Normal
0.2
967
Tumor
0.2
535
Tumor
0.2
558
Normal
0.2
554
Normal
0.2
444
Normal
0.2
455
Tumor
0.2
456
Normal
0.2
713
Tumor
0.2
1026
Normal
0.2
921
Tumor
0.1
196
Normal
0.1
981
Tumor
0.1
517
Tumor
0.1
223
Tumor
0.1
741
Tumor
0.1
212
Normal
0.1
666
Normal
0.1
411
Tumor
0.1
423
Tumor
0.1
473
Tumor
0.1
952
Normal
0.1
331
Tumor
0.1
968
Normal
0.1
636
Normal
0.1
1032
Normal
0.1
376
Normal
0.1
873
Tumor
0.1
493
Tumor
0.1
523
Tumor
0.1
616
Normal
0.1
362
Normal
0.1
514
Normal
0.1
824
Normal
0.1
414
Normal
0.1
527
Tumor
0.1
488
Normal
0.1
648
Normal
0.1
874
Normal
0.1
672
Normal
0.1
957
Tumor
0.1
224
Normal
0.1
955
Tumor
0.1
432
Normal
0.1
466
Normal
0.1
428
Normal
0.1
342
Normal
0.1
146
Normal
0.1
526
Normal
0.1
925
Tumor
0.1
738
Normal
0.1
1022
Normal
0.1
1013
Tumor
0.1
222
Normal
0.1
778
Normal
0.1
1044
Normal
0.1
756
Normal
0.1
628
Normal
0.1
192
Normal
0.1
474
Normal
0.1
818
Normal
0.1
661
Tumor
0.1
393
Tumor
0.0
422
Normal
0.0
468
Normal
0.0
976
Normal
0.0
124
Normal
0.0
142
Normal
0.0
1042
Normal
0.0
665
Tumor
0.0
662
Normal
0.0
464
Normal
0.0
1028
Normal
0.0
258
Normal
0.0
852
Normal
0.0
618
Normal
0.0
221
Tumor
0.0
214
Normal
0.0
366
Normal
0.0
492
Normal
0.0
564
Normal
0.0
1021
Tumor
0.0
714
Normal
0.0
451
Tumor
0.0
513
Tumor
0.0
953
Tumor
0.0
267
Tumor
0.0
861
Tumor
0.0
525
Tumor
0.0
327
Tumor
0.0
128
Normal
0.0
352
Normal
0.0
471
Tumor
0.0
497
Tumor
0.0
434
Normal
0.0
351
Tumor
0.0
424
Normal
0.0
436
Normal
0.0
863
Tumor
0.0
311
Tumor
-0.1
268
Normal
-0.1
487
Tumor
-0.1
851
Tumor
-0.1
217
Tumor
-0.1
195
Tumor
-0.1
218
Normal
-0.1
114
Normal
-0.1
425
Tumor
-0.1
126
Normal
-0.1
817
Tumor
-0.1
494
Normal
-0.1
361
Tumor
-0.1
786
Normal
-0.1
642
Normal
-0.1
943
Tumor
-0.1
426
Normal
-0.1
813
Tumor
-0.1
278
Normal
-0.1
917
Tumor
-0.1
465
Tumor
-0.1
816
Normal
-0.1
538
Normal
-0.1
358
Normal
-0.1
172
Normal
-0.1
977
Tumor
-0.1
412
Normal
-0.1
297
Tumor
-0.1
573
Tumor
-0.1
356
Normal
-0.1
384
Normal
-0.2
723
Tumor
-0.2
313
Tumor
-0.2
138
Normal
-0.2
923
Tumor
-0.2
722
Normal
-0.2
328
Normal
-0.2
312
Normal
-0.2
386
Normal
-0.2
944
Normal
-0.2
1046
Normal
-0.2
574
Normal
-0.2
964
Normal
-0.2
332
Normal
-0.2
956
Normal
-0.2
277
Tumor
-0.2
867
Tumor
-0.2
963
Tumor
-0.2
563
Tumor
-0.2
461
Tumor
-0.2
383
Tumor
-0.2
1025
Tumor
-0.2
534
Normal
-0.2
396
Normal
-0.2
744
Normal
-0.2
394
Normal
-0.2
913
Tumor
-0.2
533
Tumor
-0.2
344
Normal
-0.2
1045
Tumor
-0.2
435
Tumor
-0.2
446
Normal
-0.2
385
Tumor
-0.2
965
Tumor
-0.3
491
Tumor
-0.3
728
Normal
-0.3
132
Normal
-0.3
314
Normal
-0.3
191
Tumor
-0.3
883
Tumor
-0.3
951
Tumor
-0.3
187
Tumor
-0.3
697
Tumor
-0.3
617
Tumor
-0.3
416
Normal
-0.3
388
Normal
-0.3
785
Tumor
-0.3
443
Tumor
-0.3
528
Normal
-0.3
392
Normal
-0.3
367
Tumor
-0.3
136
Normal
-0.3
1015
Tumor
-0.3
375
Tumor
-0.4
515
Tumor
-0.4
671
Tumor
-0.4
161
Tumor
-0.4
186
Normal
-0.4
257
Tumor
-0.4
685
Tumor
-0.4
777
Tumor
-0.4
727
Tumor
-0.4
127
Tumor
-0.4
354
Normal
-0.4
213
Tumor
-0.4
141
Tumor
-0.4
364
Normal
-0.5
387
Tumor
-0.5
391
Tumor
-0.5
341
Tumor
-0.5
427
Tumor
-0.5
483
Tumor
-0.5
433
Tumor
-0.5
745
Tumor
-0.5
353
Tumor
-0.5
415
Tumor
-0.5
477
Tumor
-0.5
148
Normal
-0.5
363
Tumor
-0.5
663
Tumor
-0.5
231
Tumor
-0.5
162
Normal
-0.5
1041
Tumor
-0.6
421
Tumor
-0.6
911
Tumor
-0.6
567
Tumor
-0.6
147
Tumor
-0.6
1027
Tumor
-0.6
627
Tumor
-0.6
185
Tumor
-0.6
125
Tumor
-0.6
137
Tumor
-0.7
188
Normal
-0.7
365
Tumor
-0.7
368
Normal
-0.7
615
Tumor
-0.8
112
Tumor
-0.8
357
Tumor
-0.8
343
Tumor
-0.8
171
Tumor
-0.9
123
Tumor
-0.9
445
Tumor
-1.1
743
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
