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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDV3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
154.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
114.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
114.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
109.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
103.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
102.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
100.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
99.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
96.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
94.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
90.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
88.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
84.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
83.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
82.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
81.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
79.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
79.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
79.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
79.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
77.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
75.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
74.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
74.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
73.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
72.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
72.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
72.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
67.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
66.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
65.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
65.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
64.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
62.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
61.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
61.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
60.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
60.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
59.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
58.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
58.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
58.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
57.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
57.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
57.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
57.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
56.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
56.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
56.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
53.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
52.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
52.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
52.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
51.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
51.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
49.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
49.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
48.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
47.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
47.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
47.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
47.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
47.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
46.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
46.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
44.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
44.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
42.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
42.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
41.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
41.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
41.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
41.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
41.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
41.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
40.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
40.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
40.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
38.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
34.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
34.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
34.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
33.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
32.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
31.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
30.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
29.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
29.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
29.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
27.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
27.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
27.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
23.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
22.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CDV3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.7
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
105.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
102.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
83.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
80.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
80.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
79.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
78.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
75.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
74.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
71.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
71.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
69.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
67.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
66.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
66.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
66.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
65.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
64.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
63.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
63.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
63.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
63.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
63.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
62.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
62.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
60.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
60.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
60.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
59.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
59.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
59.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
57.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
56.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
56.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
55.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
55.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
55.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
54.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
53.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
53.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
53.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
53.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
52.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
51.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
51.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
49.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
49.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
48.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
48.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
48.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
47.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
47.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
47.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
46.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
45.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
45.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
44.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
44.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
43.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
43.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
40.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
39.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
37.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
37.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
36.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
34.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
33.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
24.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
525
Tumor
1.7
663
Tumor
1.3
983
Tumor
1.2
951
Tumor
1.2
221
Tumor
1.1
921
Tumor
1.0
937
Tumor
1.0
1013
Tumor
1.0
965
Tumor
1.0
537
Tumor
1.0
925
Tumor
0.9
211
Tumor
0.9
865
Tumor
0.9
471
Tumor
0.9
533
Tumor
0.9
497
Tumor
0.8
411
Tumor
0.8
1021
Tumor
0.8
493
Tumor
0.8
285
Tumor
0.8
695
Tumor
0.8
477
Tumor
0.8
953
Tumor
0.7
123
Tumor
0.7
517
Tumor
0.7
1041
Tumor
0.7
724
Normal
0.7
473
Tumor
0.7
975
Tumor
0.6
563
Tumor
0.6
943
Tumor
0.6
553
Tumor
0.6
1025
Tumor
0.6
545
Tumor
0.6
957
Tumor
0.6
1031
Tumor
0.6
823
Tumor
0.6
913
Tumor
0.6
131
Tumor
0.6
817
Tumor
0.6
737
Tumor
0.6
977
Tumor
0.6
745
Tumor
0.6
487
Tumor
0.6
375
Tumor
0.6
883
Tumor
0.6
515
Tumor
0.5
395
Tumor
0.5
535
Tumor
0.5
341
Tumor
0.5
465
Tumor
0.5
483
Tumor
0.5
917
Tumor
0.5
915
Tumor
0.5
355
Tumor
0.5
617
Tumor
0.5
523
Tumor
0.5
1043
Tumor
0.5
857
Tumor
0.5
647
Tumor
0.5
271
Tumor
0.5
223
Tumor
0.5
557
Tumor
0.4
641
Tumor
0.4
923
Tumor
0.4
573
Tumor
0.4
567
Tumor
0.4
498
Normal
0.4
351
Tumor
0.4
461
Tumor
0.4
447
Tumor
0.4
851
Tumor
0.4
195
Tumor
0.4
481
Tumor
0.4
715
Tumor
0.4
283
Tumor
0.4
385
Tumor
0.4
984
Normal
0.4
1027
Tumor
0.4
536
Normal
0.4
415
Tumor
0.4
443
Tumor
0.4
685
Tumor
0.3
978
Normal
0.3
954
Normal
0.3
955
Tumor
0.3
743
Tumor
0.3
697
Tumor
0.3
524
Normal
0.3
785
Tumor
0.3
861
Tumor
0.3
1015
Tumor
0.3
755
Tumor
0.3
963
Tumor
0.3
463
Tumor
0.3
727
Tumor
0.3
137
Tumor
0.3
217
Tumor
0.3
421
Tumor
0.3
467
Tumor
0.3
478
Normal
0.3
911
Tumor
0.3
1014
Normal
0.3
161
Tumor
0.3
387
Tumor
0.3
492
Normal
0.3
484
Normal
0.3
952
Normal
0.2
966
Normal
0.2
455
Tumor
0.2
912
Normal
0.2
267
Tumor
0.2
721
Tumor
0.2
431
Tumor
0.2
311
Tumor
0.2
297
Tumor
0.2
361
Tumor
0.2
741
Tumor
0.2
671
Tumor
0.2
867
Tumor
0.2
363
Tumor
0.2
858
Normal
0.2
277
Tumor
0.2
135
Tumor
0.2
661
Tumor
0.2
777
Tumor
0.2
881
Tumor
0.2
488
Normal
0.2
313
Tumor
0.2
922
Normal
0.1
513
Tumor
0.1
331
Tumor
0.1
141
Tumor
0.1
427
Tumor
0.1
778
Normal
0.1
125
Tumor
0.1
918
Normal
0.1
814
Normal
0.1
982
Normal
0.1
873
Tumor
0.1
538
Normal
0.1
482
Normal
0.1
916
Normal
0.1
968
Normal
0.1
383
Tumor
0.1
364
Normal
0.1
171
Tumor
0.1
696
Normal
0.1
472
Normal
0.1
786
Normal
0.1
967
Tumor
0.1
926
Normal
0.1
516
Normal
0.1
665
Tumor
0.1
491
Tumor
0.1
1045
Tumor
0.1
224
Normal
0.1
944
Normal
0.1
433
Tumor
0.1
571
Tumor
0.1
451
Tumor
0.1
964
Normal
0.1
425
Tumor
0.1
554
Normal
0.1
815
Tumor
0.1
938
Normal
0.1
327
Tumor
0.1
391
Tumor
0.1
367
Tumor
0.1
444
Normal
0.0
231
Tumor
0.0
1016
Normal
0.0
518
Normal
0.0
958
Normal
0.0
714
Normal
0.0
546
Normal
0.0
416
Normal
0.0
353
Tumor
0.0
981
Tumor
0.0
284
Normal
0.0
716
Normal
0.0
412
Normal
0.0
852
Normal
0.0
1028
Normal
0.0
413
Tumor
0.0
1044
Normal
0.0
878
Normal
0.0
213
Tumor
0.0
882
Normal
0.0
494
Normal
0.0
746
Normal
0.0
462
Normal
0.0
528
Normal
0.0
813
Tumor
0.0
914
Normal
0.0
328
Normal
0.0
862
Normal
0.0
824
Normal
0.0
228
Normal
-0.1
527
Tumor
-0.1
924
Normal
-0.1
257
Tumor
-0.1
222
Normal
-0.1
884
Normal
-0.1
863
Tumor
-0.1
976
Normal
-0.1
286
Normal
-0.1
1026
Normal
-0.1
686
Normal
-0.1
474
Normal
-0.1
698
Normal
-0.1
191
Tumor
-0.1
628
Normal
-0.1
514
Normal
-0.1
1032
Normal
-0.1
868
Normal
-0.1
356
Normal
-0.1
864
Normal
-0.1
627
Tumor
-0.1
357
Tumor
-0.1
365
Tumor
-0.1
534
Normal
-0.1
672
Normal
-0.1
1046
Normal
-0.1
384
Normal
-0.1
713
Tumor
-0.1
723
Tumor
-0.1
187
Tumor
-0.1
1022
Normal
-0.1
423
Tumor
-0.1
756
Normal
-0.2
526
Normal
-0.2
572
Normal
-0.2
728
Normal
-0.2
866
Normal
-0.2
558
Normal
-0.2
456
Normal
-0.2
362
Normal
-0.2
227
Tumor
-0.2
722
Normal
-0.2
448
Normal
-0.2
212
Normal
-0.2
145
Tumor
-0.2
664
Normal
-0.2
1042
Normal
-0.2
268
Normal
-0.2
466
Normal
-0.2
615
Tumor
-0.2
142
Normal
-0.2
376
Normal
-0.2
392
Normal
-0.2
816
Normal
-0.2
435
Tumor
-0.2
424
Normal
-0.2
744
Normal
-0.2
574
Normal
-0.2
956
Normal
-0.2
742
Normal
-0.2
446
Normal
-0.2
434
Normal
-0.2
636
Normal
-0.3
366
Normal
-0.3
738
Normal
-0.3
343
Tumor
-0.3
874
Normal
-0.3
452
Normal
-0.3
877
Tumor
-0.3
642
Normal
-0.3
568
Normal
-0.3
258
Normal
-0.3
666
Normal
-0.3
468
Normal
-0.3
662
Normal
-0.3
192
Normal
-0.3
635
Tumor
-0.3
124
Normal
-0.3
436
Normal
-0.3
352
Normal
-0.3
298
Normal
-0.3
618
Normal
-0.3
426
Normal
-0.3
818
Normal
-0.3
127
Tumor
-0.3
396
Normal
-0.3
196
Normal
-0.3
312
Normal
-0.3
214
Normal
-0.3
218
Normal
-0.3
464
Normal
-0.4
648
Normal
-0.4
262
Normal
-0.4
314
Normal
-0.4
136
Normal
-0.4
564
Normal
-0.4
261
Tumor
-0.4
445
Tumor
-0.4
344
Normal
-0.4
112
Tumor
-0.4
368
Normal
-0.4
232
Normal
-0.4
113
Tumor
-0.4
428
Normal
-0.4
616
Normal
-0.4
185
Tumor
-0.4
278
Normal
-0.4
394
Normal
-0.4
272
Normal
-0.4
422
Normal
-0.4
342
Normal
-0.5
432
Normal
-0.5
114
Normal
-0.5
414
Normal
-0.5
146
Normal
-0.5
138
Normal
-0.5
354
Normal
-0.5
332
Normal
-0.5
386
Normal
-0.5
162
Normal
-0.5
147
Tumor
-0.6
126
Normal
-0.6
148
Normal
-0.6
188
Normal
-0.6
132
Normal
-0.6
111
Normal
-0.6
358
Normal
-0.6
393
Tumor
-0.6
128
Normal
-0.6
172
Normal
-0.7
388
Normal
-0.7
186
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
