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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAP3K20 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
25.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.2
427
Tumor
1.2
465
Tumor
1.1
743
Tumor
1.0
635
Tumor
0.9
487
Tumor
0.8
357
Tumor
0.8
161
Tumor
0.7
477
Tumor
0.6
647
Tumor
0.6
863
Tumor
0.5
327
Tumor
0.5
527
Tumor
0.5
515
Tumor
0.5
455
Tumor
0.5
471
Tumor
0.5
925
Tumor
0.4
1021
Tumor
0.4
937
Tumor
0.4
283
Tumor
0.4
535
Tumor
0.4
445
Tumor
0.4
627
Tumor
0.4
557
Tumor
0.4
813
Tumor
0.4
425
Tumor
0.4
483
Tumor
0.4
1015
Tumor
0.4
127
Tumor
0.4
297
Tumor
0.4
131
Tumor
0.3
873
Tumor
0.3
461
Tumor
0.3
697
Tumor
0.3
525
Tumor
0.3
1028
Normal
0.3
137
Tumor
0.3
913
Tumor
0.3
963
Tumor
0.3
924
Normal
0.3
421
Tumor
0.3
355
Tumor
0.3
497
Tumor
0.3
737
Tumor
0.3
954
Normal
0.3
423
Tumor
0.3
744
Normal
0.3
923
Tumor
0.3
695
Tumor
0.3
983
Tumor
0.2
393
Tumor
0.2
493
Tumor
0.2
616
Normal
0.2
1022
Normal
0.2
1026
Normal
0.2
778
Normal
0.2
141
Tumor
0.2
313
Tumor
0.2
268
Normal
0.2
538
Normal
0.2
953
Tumor
0.2
447
Tumor
0.2
641
Tumor
0.2
224
Normal
0.2
785
Tumor
0.2
977
Tumor
0.2
478
Normal
0.2
498
Normal
0.2
571
Tumor
0.2
746
Normal
0.2
921
Tumor
0.2
916
Normal
0.2
721
Tumor
0.2
1013
Tumor
0.2
481
Tumor
0.2
777
Tumor
0.2
636
Normal
0.2
284
Normal
0.2
745
Tumor
0.2
615
Tumor
0.2
1025
Tumor
0.1
722
Normal
0.1
311
Tumor
0.1
563
Tumor
0.1
466
Normal
0.1
492
Normal
0.1
482
Normal
0.1
738
Normal
0.1
982
Normal
0.1
431
Tumor
0.1
714
Normal
0.1
536
Normal
0.1
344
Normal
0.1
1044
Normal
0.1
922
Normal
0.1
484
Normal
0.1
857
Tumor
0.1
223
Tumor
0.1
723
Tumor
0.1
698
Normal
0.1
958
Normal
0.1
966
Normal
0.1
878
Normal
0.1
448
Normal
0.1
978
Normal
0.1
524
Normal
0.1
976
Normal
0.1
696
Normal
0.1
298
Normal
0.1
816
Normal
0.1
415
Tumor
0.1
852
Normal
0.1
814
Normal
0.1
1032
Normal
0.1
341
Tumor
0.1
474
Normal
0.1
145
Tumor
0.1
944
Normal
0.1
135
Tumor
0.1
716
Normal
0.1
1014
Normal
0.1
456
Normal
0.1
472
Normal
0.1
473
Tumor
0.1
443
Tumor
0.0
523
Tumor
0.0
433
Tumor
0.0
516
Normal
0.0
573
Tumor
0.0
755
Tumor
0.0
228
Normal
0.0
112
Tumor
0.0
412
Normal
0.0
383
Tumor
0.0
1045
Tumor
0.0
572
Normal
0.0
968
Normal
0.0
914
Normal
0.0
353
Tumor
0.0
285
Tumor
0.0
883
Tumor
0.0
917
Tumor
0.0
818
Normal
0.0
364
Normal
0.0
724
Normal
0.0
392
Normal
0.0
488
Normal
0.0
617
Tumor
0.0
867
Tumor
0.0
128
Normal
0.0
533
Tumor
0.0
554
Normal
0.0
444
Normal
0.0
517
Tumor
0.0
1046
Normal
0.0
436
Normal
0.0
192
Normal
0.0
957
Tumor
0.0
528
Normal
0.0
728
Normal
0.0
187
Tumor
0.0
823
Tumor
0.0
984
Normal
0.0
558
Normal
0.0
332
Normal
0.0
361
Tumor
0.0
462
Normal
0.0
756
Normal
0.0
494
Normal
0.0
881
Tumor
0.0
214
Normal
0.0
328
Normal
0.0
395
Tumor
0.0
874
Normal
0.0
672
Normal
0.0
142
Normal
0.0
975
Tumor
0.0
546
Normal
0.0
956
Normal
0.0
686
Normal
-0.1
786
Normal
-0.1
464
Normal
-0.1
918
Normal
-0.1
742
Normal
-0.1
342
Normal
-0.1
518
Normal
-0.1
715
Tumor
-0.1
862
Normal
-0.1
468
Normal
-0.1
114
Normal
-0.1
864
Normal
-0.1
132
Normal
-0.1
146
Normal
-0.1
278
Normal
-0.1
434
Normal
-0.1
416
Normal
-0.1
628
Normal
-0.1
452
Normal
-0.1
312
Normal
-0.1
384
Normal
-0.1
866
Normal
-0.1
1027
Tumor
-0.1
1042
Normal
-0.1
185
Tumor
-0.1
352
Normal
-0.1
172
Normal
-0.1
882
Normal
-0.1
964
Normal
-0.1
858
Normal
-0.1
232
Normal
-0.1
271
Tumor
-0.1
981
Tumor
-0.1
926
Normal
-0.1
642
Normal
-0.1
217
Tumor
-0.1
422
Normal
-0.1
1016
Normal
-0.1
911
Tumor
-0.1
526
Normal
-0.1
195
Tumor
-0.1
915
Tumor
-0.1
426
Normal
-0.1
912
Normal
-0.1
713
Tumor
-0.1
354
Normal
-0.1
362
Normal
-0.1
952
Normal
-0.1
196
Normal
-0.1
386
Normal
-0.2
463
Tumor
-0.2
618
Normal
-0.2
943
Tumor
-0.2
514
Normal
-0.2
314
Normal
-0.2
1041
Tumor
-0.2
267
Tumor
-0.2
938
Normal
-0.2
356
Normal
-0.2
567
Tumor
-0.2
664
Normal
-0.2
868
Normal
-0.2
861
Tumor
-0.2
446
Normal
-0.2
564
Normal
-0.2
218
Normal
-0.2
413
Tumor
-0.2
124
Normal
-0.2
432
Normal
-0.2
331
Tumor
-0.2
553
Tumor
-0.2
414
Normal
-0.2
286
Normal
-0.2
1031
Tumor
-0.2
534
Normal
-0.2
824
Normal
-0.2
186
Normal
-0.2
491
Tumor
-0.2
125
Tumor
-0.2
884
Normal
-0.2
222
Normal
-0.2
376
Normal
-0.2
662
Normal
-0.2
666
Normal
-0.2
162
Normal
-0.2
188
Normal
-0.2
574
Normal
-0.2
366
Normal
-0.2
951
Tumor
-0.2
191
Tumor
-0.2
343
Tumor
-0.2
113
Tumor
-0.2
955
Tumor
-0.2
424
Normal
-0.2
365
Tumor
-0.2
815
Tumor
-0.3
394
Normal
-0.3
428
Normal
-0.3
513
Tumor
-0.3
396
Normal
-0.3
388
Normal
-0.3
111
Normal
-0.3
568
Normal
-0.3
212
Normal
-0.3
368
Normal
-0.3
136
Normal
-0.3
138
Normal
-0.3
126
Normal
-0.3
257
Tumor
-0.3
272
Normal
-0.3
262
Normal
-0.3
258
Normal
-0.3
648
Normal
-0.3
851
Tumor
-0.3
227
Tumor
-0.3
1043
Tumor
-0.3
661
Tumor
-0.3
387
Tumor
-0.4
148
Normal
-0.4
545
Tumor
-0.4
663
Tumor
-0.4
261
Tumor
-0.4
375
Tumor
-0.4
671
Tumor
-0.4
435
Tumor
-0.4
367
Tumor
-0.4
411
Tumor
-0.5
741
Tumor
-0.5
147
Tumor
-0.5
221
Tumor
-0.5
277
Tumor
-0.5
358
Normal
-0.5
965
Tumor
-0.5
213
Tumor
-0.5
385
Tumor
-0.5
211
Tumor
-0.5
727
Tumor
-0.5
967
Tumor
-0.5
817
Tumor
-0.6
363
Tumor
-0.6
685
Tumor
-0.6
451
Tumor
-0.6
171
Tumor
-0.7
391
Tumor
-0.7
351
Tumor
-0.7
467
Tumor
-0.8
123
Tumor
-0.8
231
Tumor
-0.8
865
Tumor
-0.9
665
Tumor
-0.9
877
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
