MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA Brain:49.7 nTPM
GTEx:46.8 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:129.5 nTPM
Mouse:116.6 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2019 Male, age 18, unknown 47.1
1870 Female, age 42, unknown 43.1
2666 Male, age 74, left hemisphere 43.1
2411 Female, age 72, unknown 43.0
1830 Male, age 51, unknown 40.8
1827 Male, age 72, unknown 40.2
1833 Male, age 53, unknown 39.0
2219 Male, age 76, both hemispheres 35.8
2828 Female, age 72, unknown 35.5
2586 Male, age 75, left hemisphere 34.4
Dorsal raphe nucleus
nTPM: 44.1
2047 Male, age 72, unknown 49.0
1828 Male, age 53, unknown 45.7
2750 Male, age 76, both hemispheres 43.1
2298 Female, age 72, unknown 42.3
2016 Female, age 72, unknown 40.4
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 43.5
1848 Female, age 42, unknown 40.6
1890 Male, age 53, unknown 39.0
2849 Male, age 72, unknown 38.5
Median raphe nucleus
nTPM: 43.9
2220 Male, age 76, midline 43.9
Periaquaductal grey, anterior
nTPM: 42.9
2502 Female, age 75, unknown 47.2
1947 Male, age 18, unknown 44.9
1795 Male, age 51, unknown 36.4
Periaquaductal grey, dorsal
nTPM: 38.4
1840 Male, age 53, unknown 40.3
2850 Male, age 76, both hemispheres 38.2
2464 Female, age 72, unknown 38.1
1831 Male, age 72, unknown 36.9
Periaquaductal grey, lateral
nTPM: 35.1
2272 Male, age 74, both hemispheres 37.5
2053 Male, age 18, unknown 36.4
2140 Male, age 76, both hemispheres 31.5
Pretectal area
nTPM: 44.5
1944 Female, age 72, unknown 52.5
1816 Male, age 51, unknown 51.6
1817 Female, age 42, unknown 51.6
2007 Male, age 72, unknown 49.7
1815 Male, age 53, unknown 45.7
2224 Female, age 72, unknown 43.0
2667 Female, age 75, unknown 41.9
2273 Male, age 74, both hemispheres 40.7
2407 Male, age 75, both hemispheres 40.1
2316 Male, age 76, right hemisphere 37.9
2825 Male, age 18, unknown 34.9
Red nucleus
nTPM: 41.6
1821 Female, age 72, unknown 48.5
2725 Female, age 75, unknown 47.1
2823 Male, age 76, right hemisphere 44.4
2588 Male, age 74, left hemisphere 42.5
2584 Male, age 75, left hemisphere 42.3
2785 Male, age 18, unknown 42.2
1865 Male, age 51, unknown 42.1
1954 Female, age 42, unknown 40.2
1904 Male, age 53, unknown 40.0
2503 Female, age 72, unknown 39.2
2227 Male, age 72, unknown 35.5
2769 Male, age 72, unknown 35.0
Substantia nigra
nTPM: 49.7
2241 Male, age 72, unknown 65.0
1916 Female, age 42, unknown 55.7
1941 Male, age 53, unknown 54.7
2409 Female, age 72, unknown 54.3
1889 Female, age 72, unknown 53.0
1851 Male, age 51, unknown 52.5
2699 Male, age 18, unknown 44.6
2665 Male, age 74, both hemispheres 41.1
2590 Female, age 75, unknown 39.3
2583 Male, age 75, right hemisphere 36.9
Superior colliculus
nTPM: 40.0
2587 Male, age 74, left hemisphere 47.7
2087 Female, age 72, unknown 44.1
1895 Male, age 76, right hemisphere 42.1
2261 Male, age 18, unknown 41.9
2668 Female, age 75, unknown 41.3
1913 Female, age 42, unknown 40.0
1796 Male, age 53, unknown 39.3
1839 Male, age 51, unknown 38.7
1995 Male, age 72, unknown 35.6
2664 Male, age 75, both hemispheres 28.9
Ventral tegmental area
nTPM: 45.8
2410 Female, age 72, unknown 57.1
1915 Female, age 42, unknown 47.8
2223 Female, age 72, unknown 44.2
2218 Male, age 76, both hemispheres 43.8
1942 Male, age 51, unknown 42.1
2021 Male, age 53, unknown 40.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.8
Samples: 139

Max nTPM: 85.1
Min nTPM: 25.0
Std nTPM: 10.8
Median nTPM: 43.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 85.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 72.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 71.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 70.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 69.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 66.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 66.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.9
FF:10158-103A5 76 years, female 109.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 129.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 118.9
Samples: 4

Max nTPM: 151.8
Min nTPM: 87.4
Sample A Female 151.8
Sample B Female 97.0
Sample C Male 139.3
Sample D Male 87.4
Midbrain
nTPM: 129.6
Samples: 4

Max nTPM: 141.5
Min nTPM: 117.6
Sample A Female 130.9
Sample B Female 117.6
Sample C Male 141.5
Sample D Male 128.2
Periaqueductal gray
nTPM: 111.5
Samples: 3

Max nTPM: 133.7
Min nTPM: 97.6
Sample B Female 97.6
Sample C Male 133.7
Sample D Male 103.2
Superior colliculi
nTPM: 124.2
Samples: 4

Max nTPM: 140.1
Min nTPM: 98.5
Sample A Female 140.1
Sample B Female 98.5
Sample C Male 136.1
Sample D Male 122.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 116.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.6
Samples: 4

Max nTPM: 121.8
Min nTPM: 112.9
Sample A Male 112.9
Sample B Male 121.8
Sample C Female 114.6
Sample D Female 117.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69117056 Antisense, RP_050321_01_F09, Mouse strain C57BL/6J (56 days, male) 9.4

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