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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
70.6
nTPM
HPA Brain:
111.0
nTPM
GTEx:
70.6
nTPM
FANTOM5:
182.9
Scaled Tags Per Million
Pig:
96.5
nTPM
Mouse:
61.5
nTPM
Allen mouse:
5.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 95.8
1827
Male, age 72, unknown
112.9
2666
Male, age 74, left hemisphere
112.8
2411
Female, age 72, unknown
102.9
2019
Male, age 18, unknown
100.4
2586
Male, age 75, left hemisphere
96.7
2828
Female, age 72, unknown
95.7
1870
Female, age 42, unknown
93.9
1833
Male, age 53, unknown
86.8
1830
Male, age 51, unknown
79.1
2219
Male, age 76, both hemispheres
77.3
Dorsal raphe nucleus nTPM: 100.5
2298
Female, age 72, unknown
122.5
2047
Male, age 72, unknown
105.6
1828
Male, age 53, unknown
99.8
2750
Male, age 76, both hemispheres
98.4
2016
Female, age 72, unknown
76.1
Inferior colliculus nTPM: 93.4
2097
Female, age 72, unknown
106.5
1848
Female, age 42, unknown
92.3
2849
Male, age 72, unknown
88.1
1890
Male, age 53, unknown
86.5
Median raphe nucleus nTPM: 101.5
2220
Male, age 76, midline
101.5
Periaquaductal grey, anterior nTPM: 103.5
1947
Male, age 18, unknown
115.2
1795
Male, age 51, unknown
99.9
2502
Female, age 75, unknown
95.5
Periaquaductal grey, dorsal nTPM: 82.0
2850
Male, age 76, both hemispheres
87.0
1840
Male, age 53, unknown
86.7
1831
Male, age 72, unknown
81.1
2464
Female, age 72, unknown
73.2
Periaquaductal grey, lateral nTPM: 84.4
2272
Male, age 74, both hemispheres
86.9
2053
Male, age 18, unknown
84.6
2140
Male, age 76, both hemispheres
81.8
Pretectal area nTPM: 105.0
1816
Male, age 51, unknown
131.4
1944
Female, age 72, unknown
127.9
2007
Male, age 72, unknown
127.3
1817
Female, age 42, unknown
123.4
1815
Male, age 53, unknown
110.0
2667
Female, age 75, unknown
108.5
2273
Male, age 74, both hemispheres
92.4
2224
Female, age 72, unknown
91.7
2825
Male, age 18, unknown
89.4
2407
Male, age 75, both hemispheres
77.8
2316
Male, age 76, right hemisphere
74.7
Red nucleus nTPM: 95.0
1821
Female, age 72, unknown
121.3
2725
Female, age 75, unknown
116.0
2785
Male, age 18, unknown
96.3
2503
Female, age 72, unknown
96.2
1954
Female, age 42, unknown
95.6
1865
Male, age 51, unknown
91.7
2584
Male, age 75, left hemisphere
91.6
2588
Male, age 74, left hemisphere
89.9
1904
Male, age 53, unknown
86.8
2769
Male, age 72, unknown
86.3
2823
Male, age 76, right hemisphere
84.7
2227
Male, age 72, unknown
84.0
Substantia nigra nTPM: 111.0
1916
Female, age 42, unknown
145.7
1941
Male, age 53, unknown
130.3
1889
Female, age 72, unknown
129.9
1851
Male, age 51, unknown
123.4
2241
Male, age 72, unknown
110.0
2409
Female, age 72, unknown
104.4
2583
Male, age 75, right hemisphere
97.0
2699
Male, age 18, unknown
93.0
2590
Female, age 75, unknown
89.1
2665
Male, age 74, both hemispheres
86.8
Superior colliculus nTPM: 90.9
1796
Male, age 53, unknown
106.5
2087
Female, age 72, unknown
103.1
2261
Male, age 18, unknown
101.1
2587
Male, age 74, left hemisphere
96.0
1895
Male, age 76, right hemisphere
93.9
2668
Female, age 75, unknown
92.2
1839
Male, age 51, unknown
88.9
1913
Female, age 42, unknown
87.4
1995
Male, age 72, unknown
75.0
2664
Male, age 75, both hemispheres
64.6
Ventral tegmental area nTPM: 97.6
2410
Female, age 72, unknown
127.1
1915
Female, age 42, unknown
110.0
2218
Male, age 76, both hemispheres
100.5
1942
Male, age 51, unknown
86.5
2223
Female, age 72, unknown
84.6
2021
Male, age 53, unknown
76.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 70.6
Samples: 139
Max nTPM: 158.5
Min nTPM: 44.3
Std nTPM: 17.4
Median nTPM: 66.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
158.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
137.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
131.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
114.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
110.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
109.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
105.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
100.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
98.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
96.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
95.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
91.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
90.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
89.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
89.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
88.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
88.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
87.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
86.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
86.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
85.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
85.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
85.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
85.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
84.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
83.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
83.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
82.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
82.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
82.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
81.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
80.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
79.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
79.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
78.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
77.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
77.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
76.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
75.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
75.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
74.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
73.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
72.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
72.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
72.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
72.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
72.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
72.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
71.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
71.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
70.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
70.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
70.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
69.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
69.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
69.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
69.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
68.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
68.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
68.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
68.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
68.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
67.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
67.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
67.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
66.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
66.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
66.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
66.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
66.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
66.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
65.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
65.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
65.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
64.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
64.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
64.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
64.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
64.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
64.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
63.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
63.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
63.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
63.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
63.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
62.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
62.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
62.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
62.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
62.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
62.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
62.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
61.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
61.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
61.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
61.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
61.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
61.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
61.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
61.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
60.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
60.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
60.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
59.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
59.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
58.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
58.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
58.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
58.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
58.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
57.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
57.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
57.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
57.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
57.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
56.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
56.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
56.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
55.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
55.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
54.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
54.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
54.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
54.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
54.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
54.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
53.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
53.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
52.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
52.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
52.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
51.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
50.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
49.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
48.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
45.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
44.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
61.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 61.5
Samples: 4
Max nTPM: 64.2
Min nTPM: 59.4
Sample A
Male
59.4
Sample B
Male
61.0
Sample C
Female
64.2
Sample D
Female
61.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.