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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
60.9
nTPM
HPA Brain:
94.5
nTPM
GTEx:
60.9
nTPM
FANTOM5:
156.6
Scaled Tags Per Million
Pig:
68.7
nTPM
Mouse:
54.1
nTPM
Allen mouse:
5.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA040870
Antibody CAB034261
Glial cells
Not detected
Not detected
Neuronal cells
Low
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 78.8
1898
Male, age 80, left hemisphere
107.7
2621
Female, age 67, right hemisphere
84.5
1855
Male, age 76, left hemisphere
83.2
2148
Female, age 91, left hemisphere
69.4
2529
Female, age 94, left hemisphere
66.9
1911
Female, age 85, right hemisphere
61.3
Dentate gyrus nTPM: 75.2
1927
Female, age 91, both hemispheres
89.8
2010
Male, age 76, both hemispheres
86.6
2530
Female, age 94, left hemisphere
82.5
2528
Male, age 74, both hemispheres
71.3
2246
Female, age 85, both hemispheres
66.3
2531
Female, age 67, both hemispheres
54.6
Entorhinal gyrus nTPM: 76.3
2764
Male, age 80, right hemisphere
94.0
1938
Female, age 85, left hemisphere
82.6
1787
Male, age 76, left hemisphere
78.2
2117
Female, age 91, right hemisphere
75.6
2613
Female, age 94, left hemisphere
72.8
2686
Male, age 75, right hemisphere
54.6
Hippocampus, CA1 nTPM: 79.6
2749
Male, age 80, left hemisphere
120.5
1873
Female, age 85, both hemispheres
87.5
2527
Male, age 74, both hemispheres
72.6
2045
Male, age 76, both hemispheres
64.1
2082
Female, age 91, right hemisphere
53.5
Hippocampus, CA2 nTPM: 84.7
1892
Male, age 76, both hemispheres
118.0
1963
Male, age 80, left hemisphere
110.2
1940
Female, age 85, left hemisphere
80.7
2249
Male, age 74, both hemispheres
80.2
2437
Female, age 94, left hemisphere
62.0
2113
Female, age 91, right hemisphere
57.2
Hippocampus, CA3 nTPM: 74.0
1867
Male, age 76, both hemispheres
86.1
2436
Male, age 74, both hemispheres
84.6
2137
Male, age 80, left hemisphere
81.5
1891
Female, age 85, both hemispheres
74.7
2620
Female, age 94, left hemisphere
69.4
2861
Female, age 67, both hemispheres
47.4
Parahippocampal cortex nTPM: 74.2
1850
Male, age 80, both hemispheres
105.1
2532
Female, age 72, left hemisphere
86.0
1933
Female, age 85, both hemispheres
80.5
1990
Female, age 91, right hemisphere
79.2
2245
Female, age 91, both hemispheres
77.1
2250
Female, age 67, right hemisphere
70.6
2018
Male, age 76, both hemispheres
64.5
2692
Male, age 74, both hemispheres
60.3
2693
Female, age 94, both hemispheres
59.5
2622
Female, age 67, right hemisphere
59.0
Perirhinal gyrus nTPM: 94.5
1794
Male, age 80, right hemisphere
110.6
1847
Female, age 91, left hemisphere
108.2
1841
Female, age 85, right hemisphere
94.5
2521
Female, age 94, right hemisphere
79.6
2848
Male, age 76, right hemisphere
79.6
Subiculum nTPM: 68.3
1901
Male, age 80, both hemispheres
85.5
1977
Female, age 85, both hemispheres
81.8
2619
Male, age 74, both hemispheres
72.3
2042
Male, age 76, both hemispheres
59.6
2729
Female, age 91, right hemisphere
56.5
2438
Female, age 94, left hemisphere
54.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 60.9
Samples: 197
Max nTPM: 97.1
Min nTPM: 36.9
Std nTPM: 12.0
Median nTPM: 58.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
97.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
97.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
96.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
92.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
90.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
89.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
87.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
87.5
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
87.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
86.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
85.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
83.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
81.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
81.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
81.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
80.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
80.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
79.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
79.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
78.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
77.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
77.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
76.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
76.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
74.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
74.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
74.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
73.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
73.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
72.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
72.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
71.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
71.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
71.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
71.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
71.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
71.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
70.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
70.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
70.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
70.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
69.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
69.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
69.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
69.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
68.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
68.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
68.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
68.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
68.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
68.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
68.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
67.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
67.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
66.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
66.5
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
66.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
66.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
65.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
65.3
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
65.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
65.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
64.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
64.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
64.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
63.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
63.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
63.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
63.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
63.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
63.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
63.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
62.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
62.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
62.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
62.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
61.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
61.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
61.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
61.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
61.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
61.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
61.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
60.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
60.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
60.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
60.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
60.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
59.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
59.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
59.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
58.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
58.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
58.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
58.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
58.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
58.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
58.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
58.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
58.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
58.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
58.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
58.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
58.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
57.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
57.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
57.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
57.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
57.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
57.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
57.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
57.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
57.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
56.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
56.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
56.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
56.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
56.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
56.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
56.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
55.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
55.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
55.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
55.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
55.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
55.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
55.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
55.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
55.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
54.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
54.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
54.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
54.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
54.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
54.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
54.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
54.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
54.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
54.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
53.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
53.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
53.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
53.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
53.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
53.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
52.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
52.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
52.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
52.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
52.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
51.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
51.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
51.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
51.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
51.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
51.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
51.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
50.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
50.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
50.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
50.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
50.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
49.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
49.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
49.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
48.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
48.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
48.4
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
48.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
48.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
47.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
47.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
47.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
47.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
47.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
47.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
46.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
46.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
46.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
46.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
46.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
46.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
46.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
45.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
45.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
44.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
44.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
44.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
44.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
44.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
44.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
43.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
43.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
41.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
41.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
37.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
36.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 54.1
Samples: 4
Max nTPM: 60.8
Min nTPM: 49.4
Sample A
Male
52.3
Sample B
Male
53.9
Sample C
Female
49.4
Sample D
Female
60.8
Hippocampal formation nTPM: 50.1
Samples: 4
Max nTPM: 54.6
Min nTPM: 46.0
Sample A
Male
46.0
Sample B
Male
51.4
Sample C
Female
54.6
Sample D
Female
48.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.