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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCOLN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
34.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
29.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
28.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
25.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
21.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
15.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCOLN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
20.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.3
1025
Tumor
1.2
557
Tumor
1.0
915
Tumor
0.9
383
Tumor
0.9
271
Tumor
0.8
823
Tumor
0.8
125
Tumor
0.8
395
Tumor
0.8
147
Tumor
0.8
363
Tumor
0.7
285
Tumor
0.7
471
Tumor
0.7
221
Tumor
0.7
1027
Tumor
0.6
851
Tumor
0.6
343
Tumor
0.6
451
Tumor
0.6
1041
Tumor
0.6
527
Tumor
0.6
573
Tumor
0.5
223
Tumor
0.5
713
Tumor
0.5
277
Tumor
0.5
283
Tumor
0.5
424
Normal
0.5
463
Tumor
0.5
425
Tumor
0.5
912
Normal
0.5
224
Normal
0.4
257
Tumor
0.4
135
Tumor
0.4
867
Tumor
0.4
467
Tumor
0.4
171
Tumor
0.4
461
Tumor
0.4
525
Tumor
0.4
814
Normal
0.4
1021
Tumor
0.3
191
Tumor
0.3
426
Normal
0.3
431
Tumor
0.3
124
Normal
0.3
428
Normal
0.3
483
Tumor
0.3
393
Tumor
0.3
423
Tumor
0.3
114
Normal
0.3
414
Normal
0.3
421
Tumor
0.3
111
Normal
0.3
355
Tumor
0.3
493
Tumor
0.3
466
Normal
0.3
311
Tumor
0.3
523
Tumor
0.3
977
Tumor
0.3
553
Tumor
0.3
455
Tumor
0.3
813
Tumor
0.3
777
Tumor
0.3
187
Tumor
0.2
911
Tumor
0.2
261
Tumor
0.2
137
Tumor
0.2
715
Tumor
0.2
721
Tumor
0.2
785
Tumor
0.2
411
Tumor
0.2
445
Tumor
0.2
743
Tumor
0.2
884
Normal
0.2
864
Normal
0.2
468
Normal
0.2
526
Normal
0.2
131
Tumor
0.2
943
Tumor
0.2
491
Tumor
0.2
353
Tumor
0.2
113
Tumor
0.2
685
Tumor
0.2
214
Normal
0.2
314
Normal
0.2
231
Tumor
0.2
413
Tumor
0.2
464
Normal
0.2
953
Tumor
0.2
443
Tumor
0.2
436
Normal
0.1
427
Tumor
0.1
862
Normal
0.1
863
Tumor
0.1
456
Normal
0.1
877
Tumor
0.1
212
Normal
0.1
136
Normal
0.1
861
Tumor
0.1
737
Tumor
0.1
386
Normal
0.1
882
Normal
0.1
332
Normal
0.1
141
Tumor
0.1
313
Tumor
0.1
227
Tumor
0.1
387
Tumor
0.1
146
Normal
0.1
278
Normal
0.1
572
Normal
0.1
138
Normal
0.1
188
Normal
0.1
132
Normal
0.1
217
Tumor
0.1
881
Tumor
0.1
162
Normal
0.1
391
Tumor
0.1
192
Normal
0.1
148
Normal
0.1
786
Normal
0.1
112
Tumor
0.1
533
Tumor
0.1
126
Normal
0.0
617
Tumor
0.0
357
Tumor
0.0
145
Tumor
0.0
647
Tumor
0.0
222
Normal
0.0
432
Normal
0.0
567
Tumor
0.0
213
Tumor
0.0
365
Tumor
0.0
914
Normal
0.0
297
Tumor
0.0
286
Normal
0.0
127
Tumor
0.0
396
Normal
0.0
218
Normal
0.0
128
Normal
0.0
878
Normal
0.0
388
Normal
0.0
568
Normal
0.0
433
Tumor
0.0
574
Normal
0.0
195
Tumor
0.0
448
Normal
0.0
515
Tumor
0.0
1042
Normal
0.0
724
Normal
0.0
615
Tumor
0.0
446
Normal
0.0
1022
Normal
0.0
665
Tumor
0.0
921
Tumor
0.0
954
Normal
0.0
422
Normal
0.0
344
Normal
-0.1
331
Tumor
-0.1
756
Normal
-0.1
494
Normal
-0.1
473
Tumor
-0.1
284
Normal
-0.1
697
Tumor
-0.1
354
Normal
-0.1
868
Normal
-0.1
778
Normal
-0.1
196
Normal
-0.1
452
Normal
-0.1
661
Tumor
-0.1
356
Normal
-0.1
267
Tumor
-0.1
358
Normal
-0.1
142
Normal
-0.1
327
Tumor
-0.1
465
Tumor
-0.1
394
Normal
-0.1
815
Tumor
-0.1
172
Normal
-0.1
816
Normal
-0.1
938
Normal
-0.1
937
Tumor
-0.1
627
Tumor
-0.1
412
Normal
-0.1
984
Normal
-0.1
434
Normal
-0.1
641
Tumor
-0.1
976
Normal
-0.1
186
Normal
-0.1
312
Normal
-0.1
983
Tumor
-0.1
298
Normal
-0.1
185
Tumor
-0.1
328
Normal
-0.1
722
Normal
-0.1
498
Normal
-0.1
1031
Tumor
-0.1
1026
Normal
-0.1
824
Normal
-0.1
487
Tumor
-0.1
968
Normal
-0.1
564
Normal
-0.1
268
Normal
-0.1
228
Normal
-0.1
367
Tumor
-0.1
1015
Tumor
-0.2
746
Normal
-0.2
415
Tumor
-0.2
1016
Normal
-0.2
686
Normal
-0.2
416
Normal
-0.2
698
Normal
-0.2
618
Normal
-0.2
161
Tumor
-0.2
852
Normal
-0.2
964
Normal
-0.2
558
Normal
-0.2
272
Normal
-0.2
982
Normal
-0.2
923
Tumor
-0.2
341
Tumor
-0.2
967
Tumor
-0.2
444
Normal
-0.2
866
Normal
-0.2
362
Normal
-0.2
648
Normal
-0.2
858
Normal
-0.2
672
Normal
-0.2
1014
Normal
-0.2
524
Normal
-0.2
913
Tumor
-0.2
818
Normal
-0.2
392
Normal
-0.2
342
Normal
-0.2
364
Normal
-0.2
352
Normal
-0.2
956
Normal
-0.2
514
Normal
-0.2
1045
Tumor
-0.2
975
Tumor
-0.2
916
Normal
-0.2
817
Tumor
-0.2
755
Tumor
-0.2
662
Normal
-0.2
874
Normal
-0.2
517
Tumor
-0.2
952
Normal
-0.2
635
Tumor
-0.2
666
Normal
-0.2
571
Tumor
-0.2
211
Tumor
-0.3
696
Normal
-0.3
518
Normal
-0.3
484
Normal
-0.3
918
Normal
-0.3
1046
Normal
-0.3
563
Tumor
-0.3
745
Tumor
-0.3
873
Tumor
-0.3
492
Normal
-0.3
981
Tumor
-0.3
664
Normal
-0.3
955
Tumor
-0.3
714
Normal
-0.3
944
Normal
-0.3
513
Tumor
-0.3
978
Normal
-0.3
232
Normal
-0.3
1044
Normal
-0.3
728
Normal
-0.3
883
Tumor
-0.3
958
Normal
-0.3
957
Tumor
-0.3
857
Tumor
-0.3
447
Tumor
-0.4
488
Normal
-0.4
477
Tumor
-0.4
727
Tumor
-0.4
966
Normal
-0.4
462
Normal
-0.4
262
Normal
-0.4
481
Tumor
-0.4
642
Normal
-0.4
258
Normal
-0.4
742
Normal
-0.4
1032
Normal
-0.4
497
Tumor
-0.4
951
Tumor
-0.4
865
Tumor
-0.4
545
Tumor
-0.4
671
Tumor
-0.4
368
Normal
-0.4
663
Tumor
-0.4
963
Tumor
-0.4
741
Tumor
-0.4
435
Tumor
-0.4
636
Normal
-0.5
744
Normal
-0.5
474
Normal
-0.5
351
Tumor
-0.5
965
Tumor
-0.5
616
Normal
-0.5
716
Normal
-0.5
1043
Tumor
-0.5
534
Normal
-0.5
528
Normal
-0.5
924
Normal
-0.5
538
Normal
-0.5
546
Normal
-0.5
385
Tumor
-0.5
738
Normal
-0.5
537
Tumor
-0.5
922
Normal
-0.5
917
Tumor
-0.6
628
Normal
-0.6
472
Normal
-0.6
925
Tumor
-0.6
516
Normal
-0.6
1013
Tumor
-0.6
536
Normal
-0.6
366
Normal
-0.6
554
Normal
-0.7
723
Tumor
-0.7
478
Normal
-0.7
361
Tumor
-0.8
926
Normal
-0.8
535
Tumor
-0.8
375
Tumor
-0.8
1028
Normal
-0.9
482
Normal
-0.9
695
Tumor
-0.9
376
Normal
-0.9
384
Normal
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
