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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNPTG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
58.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
55.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
53.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
53.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
49.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
46.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
44.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
43.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
42.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
41.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
39.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
39.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
37.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
37.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
34.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
33.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
33.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
33.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
27.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
27.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
25.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
24.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
24.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
22.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
20.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
20.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
19.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNPTG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
71.4
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
248.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
204.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
187.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
172.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
169.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
163.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
161.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
160.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
154.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
152.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
142.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
139.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
136.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
136.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
135.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
134.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
124.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
121.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
120.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
119.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
118.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
115.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
113.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
113.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
113.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
113.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
112.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
110.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
110.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
109.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
108.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
107.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
107.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
106.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
106.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
104.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
103.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
103.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
103.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
102.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
100.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
99.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
98.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
97.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
97.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
95.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
95.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
92.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
92.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
91.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
91.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
90.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
90.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
89.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
89.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
88.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
88.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
87.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
87.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
87.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
87.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
86.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
86.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
85.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
85.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
84.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
84.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
84.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
83.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
83.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
81.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
80.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
80.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
79.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
79.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
79.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
79.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
78.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
77.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
77.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
77.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
76.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
76.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
74.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
74.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
74.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
73.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
73.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
73.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
73.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
73.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
72.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
72.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
72.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
70.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
69.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
69.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
69.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
68.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
68.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
68.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
67.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
67.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
66.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
65.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
65.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
64.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
63.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
63.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
63.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
63.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
62.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
61.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
61.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
61.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
59.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
59.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
58.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
56.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
56.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
55.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
53.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
52.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
52.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
51.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
51.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
50.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
50.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
48.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
48.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
48.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
47.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
47.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
46.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
45.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
45.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
45.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
44.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
43.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
39.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
38.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
38.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
34.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.1
351
Tumor
1.1
313
Tumor
1.0
311
Tumor
0.9
357
Tumor
0.8
331
Tumor
0.8
297
Tumor
0.8
977
Tumor
0.7
231
Tumor
0.7
663
Tumor
0.7
491
Tumor
0.6
1021
Tumor
0.6
277
Tumor
0.6
427
Tumor
0.6
813
Tumor
0.6
445
Tumor
0.6
527
Tumor
0.6
127
Tumor
0.6
953
Tumor
0.5
911
Tumor
0.5
391
Tumor
0.5
332
Normal
0.5
975
Tumor
0.5
635
Tumor
0.5
636
Normal
0.5
617
Tumor
0.5
278
Normal
0.5
616
Normal
0.5
1041
Tumor
0.5
394
Normal
0.5
388
Normal
0.5
697
Tumor
0.5
312
Normal
0.5
698
Normal
0.4
425
Tumor
0.4
471
Tumor
0.4
267
Tumor
0.4
123
Tumor
0.4
367
Tumor
0.4
777
Tumor
0.4
232
Normal
0.4
125
Tumor
0.4
186
Normal
0.4
951
Tumor
0.4
1015
Tumor
0.4
361
Tumor
0.4
383
Tumor
0.4
914
Normal
0.4
913
Tumor
0.4
883
Tumor
0.4
112
Tumor
0.4
465
Tumor
0.4
396
Normal
0.4
448
Normal
0.3
257
Tumor
0.3
113
Tumor
0.3
283
Tumor
0.3
487
Tumor
0.3
574
Normal
0.3
128
Normal
0.3
387
Tumor
0.3
715
Tumor
0.3
392
Normal
0.3
785
Tumor
0.3
365
Tumor
0.3
523
Tumor
0.3
564
Normal
0.3
124
Normal
0.3
262
Normal
0.3
395
Tumor
0.3
724
Normal
0.3
148
Normal
0.3
161
Tumor
0.3
497
Tumor
0.3
1013
Tumor
0.3
455
Tumor
0.3
298
Normal
0.3
172
Normal
0.3
258
Normal
0.3
386
Normal
0.3
661
Tumor
0.3
423
Tumor
0.3
786
Normal
0.2
937
Tumor
0.2
647
Tumor
0.2
314
Normal
0.2
162
Normal
0.2
375
Tumor
0.2
515
Tumor
0.2
857
Tumor
0.2
981
Tumor
0.2
615
Tumor
0.2
211
Tumor
0.2
463
Tumor
0.2
642
Normal
0.2
864
Normal
0.2
188
Normal
0.2
746
Normal
0.2
966
Normal
0.2
261
Tumor
0.2
1031
Tumor
0.2
671
Tumor
0.2
618
Normal
0.2
628
Normal
0.2
665
Tumor
0.2
268
Normal
0.2
713
Tumor
0.2
271
Tumor
0.2
137
Tumor
0.2
126
Normal
0.2
912
Normal
0.2
573
Tumor
0.2
1025
Tumor
0.2
466
Normal
0.2
141
Tumor
0.2
627
Tumor
0.2
342
Normal
0.2
741
Tumor
0.2
641
Tumor
0.1
568
Normal
0.1
778
Normal
0.1
142
Normal
0.1
111
Normal
0.1
814
Normal
0.1
756
Normal
0.1
957
Tumor
0.1
285
Tumor
0.1
685
Tumor
0.1
525
Tumor
0.1
964
Normal
0.1
114
Normal
0.1
147
Tumor
0.1
695
Tumor
0.1
353
Tumor
0.1
877
Tumor
0.1
755
Tumor
0.1
272
Normal
0.1
815
Tumor
0.1
572
Normal
0.1
452
Normal
0.1
533
Tumor
0.1
878
Normal
0.1
461
Tumor
0.1
965
Tumor
0.1
862
Normal
0.1
135
Tumor
0.1
926
Normal
0.1
384
Normal
0.1
535
Tumor
0.1
341
Tumor
0.1
672
Normal
0.1
217
Tumor
0.1
513
Tumor
0.1
355
Tumor
0.1
874
Normal
0.1
952
Normal
0.1
963
Tumor
0.0
884
Normal
0.0
214
Normal
0.0
344
Normal
0.0
956
Normal
0.0
563
Tumor
0.0
368
Normal
0.0
955
Tumor
0.0
393
Tumor
0.0
221
Tumor
0.0
745
Tumor
0.0
976
Normal
0.0
858
Normal
0.0
571
Tumor
0.0
514
Normal
0.0
481
Tumor
0.0
868
Normal
0.0
468
Normal
0.0
354
Normal
0.0
518
Normal
0.0
195
Tumor
0.0
138
Normal
0.0
196
Normal
0.0
873
Tumor
0.0
493
Tumor
0.0
191
Tumor
0.0
366
Normal
0.0
648
Normal
0.0
1014
Normal
0.0
222
Normal
0.0
433
Tumor
0.0
363
Tumor
0.0
866
Normal
0.0
664
Normal
0.0
1045
Tumor
0.0
478
Normal
0.0
742
Normal
0.0
728
Normal
0.0
456
Normal
0.0
528
Normal
0.0
982
Normal
-0.1
938
Normal
-0.1
352
Normal
-0.1
816
Normal
-0.1
327
Tumor
-0.1
362
Normal
-0.1
358
Normal
-0.1
943
Tumor
-0.1
1044
Normal
-0.1
218
Normal
-0.1
223
Tumor
-0.1
213
Tumor
-0.1
967
Tumor
-0.1
472
Normal
-0.1
192
Normal
-0.1
413
Tumor
-0.1
451
Tumor
-0.1
474
Normal
-0.1
925
Tumor
-0.1
132
Normal
-0.1
738
Normal
-0.1
824
Normal
-0.1
146
Normal
-0.1
968
Normal
-0.1
553
Tumor
-0.1
462
Normal
-0.1
545
Tumor
-0.1
558
Normal
-0.1
662
Normal
-0.1
136
Normal
-0.1
983
Tumor
-0.1
557
Tumor
-0.1
727
Tumor
-0.1
666
Normal
-0.1
978
Normal
-0.1
492
Normal
-0.1
376
Normal
-0.1
737
Tumor
-0.1
426
Normal
-0.1
131
Tumor
-0.1
863
Tumor
-0.1
356
Normal
-0.1
1046
Normal
-0.1
424
Normal
-0.1
516
Normal
-0.1
944
Normal
-0.1
922
Normal
-0.1
924
Normal
-0.1
867
Tumor
-0.1
482
Normal
-0.1
882
Normal
-0.1
921
Tumor
-0.1
546
Normal
-0.2
467
Tumor
-0.2
517
Tumor
-0.2
538
Normal
-0.2
865
Tumor
-0.2
851
Tumor
-0.2
823
Tumor
-0.2
721
Tumor
-0.2
224
Normal
-0.2
567
Tumor
-0.2
984
Normal
-0.2
464
Normal
-0.2
284
Normal
-0.2
722
Normal
-0.2
818
Normal
-0.2
414
Normal
-0.2
817
Tumor
-0.2
1016
Normal
-0.2
524
Normal
-0.2
526
Normal
-0.2
228
Normal
-0.2
145
Tumor
-0.2
958
Normal
-0.2
484
Normal
-0.2
534
Normal
-0.2
723
Tumor
-0.2
686
Normal
-0.2
446
Normal
-0.2
443
Tumor
-0.2
744
Normal
-0.2
554
Normal
-0.2
916
Normal
-0.2
954
Normal
-0.2
743
Tumor
-0.2
364
Normal
-0.2
428
Normal
-0.2
432
Normal
-0.2
286
Normal
-0.2
861
Tumor
-0.2
852
Normal
-0.2
212
Normal
-0.3
411
Tumor
-0.3
416
Normal
-0.3
185
Tumor
-0.3
421
Tumor
-0.3
436
Normal
-0.3
536
Normal
-0.3
714
Normal
-0.3
917
Tumor
-0.3
422
Normal
-0.3
431
Tumor
-0.3
328
Normal
-0.3
415
Tumor
-0.3
434
Normal
-0.3
187
Tumor
-0.3
716
Normal
-0.3
473
Tumor
-0.3
477
Tumor
-0.3
488
Normal
-0.3
881
Tumor
-0.4
444
Normal
-0.4
447
Tumor
-0.4
1028
Normal
-0.4
537
Tumor
-0.4
412
Normal
-0.4
1027
Tumor
-0.4
483
Tumor
-0.4
915
Tumor
-0.4
494
Normal
-0.4
696
Normal
-0.5
498
Normal
-0.5
435
Tumor
-0.5
1043
Tumor
-0.5
227
Tumor
-0.5
923
Tumor
-0.5
1026
Normal
-0.5
171
Tumor
-0.5
385
Tumor
-0.5
918
Normal
-0.7
1022
Normal
-1.0
1042
Normal
-1.2
1032
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
