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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPG21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
187.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
179.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
141.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
139.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
129.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
118.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
116.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
115.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
114.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
113.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
113.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
112.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
110.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
110.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
108.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
107.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
104.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
104.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
103.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
103.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
101.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
97.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
96.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
96.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
95.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
95.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
94.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
93.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
92.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
91.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
91.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
91.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
90.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
89.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
89.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
88.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
88.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
87.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
87.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
85.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
85.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
85.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
85.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
84.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
84.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
84.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
82.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
81.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
80.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
78.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
78.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
77.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
77.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
77.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
77.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
75.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
75.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
75.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
74.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
74.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
74.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
74.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
74.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
74.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
74.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
74.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
73.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
73.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
72.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
72.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
71.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
71.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
70.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
70.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
70.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
70.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
70.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
69.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
69.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
69.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
68.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
68.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
68.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
67.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
67.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
67.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
67.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
67.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
66.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
66.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
66.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
66.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
65.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
65.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
65.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
65.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
65.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
64.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
64.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
64.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
64.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
64.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
63.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
63.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
63.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
63.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
62.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
62.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
62.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
62.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
61.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
61.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
59.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
59.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
59.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
59.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
59.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
59.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
58.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
58.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
58.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
57.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
57.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
57.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
56.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
56.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
56.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
56.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
55.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
55.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
55.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
55.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
55.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
55.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
55.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
55.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
54.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
54.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
54.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
54.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
53.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
52.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
52.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
52.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
52.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
51.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
51.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
50.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
50.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
50.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
49.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
49.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
49.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
49.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
48.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
48.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
47.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
47.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
46.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
46.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
45.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
45.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
45.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
45.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
45.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
45.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
44.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
44.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
44.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
44.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
44.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
42.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
42.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
42.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
41.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
41.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
41.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
41.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
40.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
40.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
40.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
39.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
39.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
38.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
37.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
37.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
37.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
36.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
36.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
35.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
31.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
28.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
28.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
21.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPG21 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.9
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
169.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
161.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
157.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
134.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
127.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
123.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
122.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
120.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
113.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
107.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
107.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
102.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
101.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
99.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
99.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
98.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
97.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
95.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
94.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
93.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
92.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
91.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
90.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
88.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
87.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
86.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
86.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
84.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
83.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
82.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
82.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
82.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
82.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
81.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
81.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
80.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
80.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
80.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
80.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
79.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
79.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
79.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
78.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
78.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
78.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
77.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
76.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
76.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
75.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
75.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
75.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
75.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
75.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
75.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
75.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
75.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
74.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
74.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
74.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
73.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
73.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
73.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
73.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
73.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
73.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
73.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
72.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
72.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
72.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
72.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
71.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
71.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
71.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
71.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
71.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
70.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
70.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
70.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
70.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
70.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
69.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
69.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
69.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
69.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
68.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
68.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
67.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
67.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
67.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
66.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
66.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
65.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
65.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
64.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
64.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
64.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
64.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
64.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
63.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
62.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
61.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
61.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
61.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
60.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
59.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
59.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
59.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
59.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
59.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
59.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
58.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
58.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
58.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
58.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
57.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
57.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
57.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
56.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
56.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
56.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
56.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
55.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
55.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
55.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
55.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
55.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
55.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
55.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
54.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
53.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
53.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
53.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
53.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
52.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
52.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
52.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
51.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
51.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
51.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
51.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
51.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
50.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
48.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
48.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
47.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
47.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
47.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
46.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
46.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
45.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
45.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
44.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
44.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
43.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
43.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
42.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
38.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
36.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
34.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.7
343
Tumor
0.7
745
Tumor
0.7
471
Tumor
0.6
435
Tumor
0.6
257
Tumor
0.6
777
Tumor
0.6
863
Tumor
0.5
271
Tumor
0.5
147
Tumor
0.5
615
Tumor
0.5
743
Tumor
0.5
921
Tumor
0.4
327
Tumor
0.4
127
Tumor
0.4
451
Tumor
0.4
393
Tumor
0.4
785
Tumor
0.4
533
Tumor
0.4
443
Tumor
0.4
957
Tumor
0.4
313
Tumor
0.4
461
Tumor
0.4
135
Tumor
0.4
123
Tumor
0.4
211
Tumor
0.3
851
Tumor
0.3
283
Tumor
0.3
231
Tumor
0.3
627
Tumor
0.3
573
Tumor
0.3
113
Tumor
0.3
124
Normal
0.3
187
Tumor
0.3
563
Tumor
0.3
755
Tumor
0.2
357
Tumor
0.2
432
Normal
0.2
298
Normal
0.2
162
Normal
0.2
746
Normal
0.2
111
Normal
0.2
483
Tumor
0.2
952
Normal
0.2
1027
Tumor
0.2
311
Tumor
0.2
953
Tumor
0.2
445
Tumor
0.2
571
Tumor
0.2
415
Tumor
0.2
617
Tumor
0.2
421
Tumor
0.2
222
Normal
0.2
425
Tumor
0.2
365
Tumor
0.2
363
Tumor
0.2
361
Tumor
0.2
1045
Tumor
0.2
491
Tumor
0.2
965
Tumor
0.2
564
Normal
0.1
227
Tumor
0.1
537
Tumor
0.1
912
Normal
0.1
455
Tumor
0.1
342
Normal
0.1
1043
Tumor
0.1
258
Normal
0.1
858
Normal
0.1
963
Tumor
0.1
481
Tumor
0.1
436
Normal
0.1
738
Normal
0.1
411
Tumor
0.1
913
Tumor
0.1
484
Normal
0.1
412
Normal
0.1
513
Tumor
0.1
448
Normal
0.1
487
Tumor
0.1
823
Tumor
0.1
375
Tumor
0.1
297
Tumor
0.1
172
Normal
0.1
446
Normal
0.1
128
Normal
0.1
358
Normal
0.1
713
Tumor
0.1
186
Normal
0.1
272
Normal
0.1
464
Normal
0.1
426
Normal
0.1
185
Tumor
0.1
467
Tumor
0.1
1014
Normal
0.1
332
Normal
0.1
937
Tumor
0.1
1025
Tumor
0.1
721
Tumor
0.1
195
Tumor
0.1
553
Tumor
0.1
131
Tumor
0.1
958
Normal
0.1
641
Tumor
0.1
616
Normal
0.1
434
Normal
0.1
515
Tumor
0.1
456
Normal
0.1
493
Tumor
0.1
666
Normal
0.1
161
Tumor
0.0
494
Normal
0.0
148
Normal
0.0
462
Normal
0.0
114
Normal
0.0
354
Normal
0.0
277
Tumor
0.0
664
Normal
0.0
362
Normal
0.0
524
Normal
0.0
1016
Normal
0.0
523
Tumor
0.0
224
Normal
0.0
132
Normal
0.0
278
Normal
0.0
911
Tumor
0.0
314
Normal
0.0
882
Normal
0.0
472
Normal
0.0
648
Normal
0.0
534
Normal
0.0
488
Normal
0.0
968
Normal
0.0
756
Normal
0.0
517
Tumor
0.0
557
Tumor
0.0
433
Tumor
0.0
468
Normal
0.0
568
Normal
0.0
191
Tumor
0.0
824
Normal
0.0
367
Tumor
0.0
142
Normal
0.0
267
Tumor
0.0
546
Normal
0.0
518
Normal
0.0
422
Normal
0.0
964
Normal
0.0
126
Normal
0.0
427
Tumor
0.0
232
Normal
0.0
466
Normal
0.0
966
Normal
0.0
331
Tumor
0.0
742
Normal
0.0
137
Tumor
0.0
344
Normal
0.0
697
Tumor
0.0
723
Tumor
0.0
714
Normal
0.0
661
Tumor
0.0
213
Tumor
0.0
813
Tumor
0.0
394
Normal
0.0
196
Normal
0.0
915
Tumor
0.0
722
Normal
0.0
914
Normal
0.0
136
Normal
0.0
262
Normal
0.0
268
Normal
0.0
618
Normal
0.0
924
Normal
0.0
955
Tumor
0.0
925
Tumor
0.0
635
Tumor
0.0
728
Normal
0.0
527
Tumor
0.0
741
Tumor
0.0
567
Tumor
0.0
737
Tumor
0.0
376
Normal
0.0
558
Normal
0.0
364
Normal
0.0
572
Normal
0.0
696
Normal
0.0
482
Normal
0.0
474
Normal
0.0
554
Normal
0.0
366
Normal
0.0
284
Normal
0.0
171
Tumor
-0.1
498
Normal
-0.1
356
Normal
-0.1
386
Normal
-0.1
444
Normal
-0.1
1044
Normal
-0.1
864
Normal
-0.1
976
Normal
-0.1
862
Normal
-0.1
516
Normal
-0.1
744
Normal
-0.1
428
Normal
-0.1
923
Tumor
-0.1
385
Tumor
-0.1
138
Normal
-0.1
312
Normal
-0.1
214
Normal
-0.1
536
Normal
-0.1
956
Normal
-0.1
671
Tumor
-0.1
261
Tumor
-0.1
525
Tumor
-0.1
228
Normal
-0.1
938
Normal
-0.1
1026
Normal
-0.1
724
Normal
-0.1
663
Tumor
-0.1
146
Normal
-0.1
715
Tumor
-0.1
452
Normal
-0.1
384
Normal
-0.1
944
Normal
-0.1
975
Tumor
-0.1
528
Normal
-0.1
353
Tumor
-0.1
423
Tumor
-0.1
388
Normal
-0.1
478
Normal
-0.1
818
Normal
-0.1
874
Normal
-0.1
391
Tumor
-0.1
414
Normal
-0.1
217
Tumor
-0.1
396
Normal
-0.1
368
Normal
-0.1
383
Tumor
-0.1
188
Normal
-0.1
1031
Tumor
-0.1
861
Tumor
-0.1
286
Normal
-0.1
978
Normal
-0.1
982
Normal
-0.1
416
Normal
-0.1
395
Tumor
-0.1
814
Normal
-0.1
424
Normal
-0.1
926
Normal
-0.1
1022
Normal
-0.1
392
Normal
-0.1
574
Normal
-0.1
883
Tumor
-0.1
786
Normal
-0.1
662
Normal
-0.1
328
Normal
-0.1
212
Normal
-0.1
816
Normal
-0.1
873
Tumor
-0.1
1046
Normal
-0.1
218
Normal
-0.1
665
Tumor
-0.1
538
Normal
-0.1
223
Tumor
-0.1
477
Tumor
-0.1
1042
Normal
-0.1
878
Normal
-0.2
628
Normal
-0.2
1032
Normal
-0.2
642
Normal
-0.2
716
Normal
-0.2
778
Normal
-0.2
636
Normal
-0.2
916
Normal
-0.2
1021
Tumor
-0.2
672
Normal
-0.2
141
Tumor
-0.2
1013
Tumor
-0.2
918
Normal
-0.2
514
Normal
-0.2
951
Tumor
-0.2
463
Tumor
-0.2
884
Normal
-0.2
492
Normal
-0.2
922
Normal
-0.2
221
Tumor
-0.2
526
Normal
-0.2
352
Normal
-0.2
145
Tumor
-0.2
535
Tumor
-0.2
473
Tumor
-0.2
954
Normal
-0.2
112
Tumor
-0.2
984
Normal
-0.2
387
Tumor
-0.2
852
Normal
-0.2
1028
Normal
-0.2
341
Tumor
-0.2
698
Normal
-0.2
686
Normal
-0.2
865
Tumor
-0.2
881
Tumor
-0.2
981
Tumor
-0.2
943
Tumor
-0.2
868
Normal
-0.2
192
Normal
-0.2
817
Tumor
-0.2
857
Tumor
-0.2
815
Tumor
-0.3
977
Tumor
-0.3
685
Tumor
-0.3
867
Tumor
-0.3
355
Tumor
-0.3
866
Normal
-0.3
545
Tumor
-0.3
695
Tumor
-0.3
497
Tumor
-0.3
877
Tumor
-0.3
647
Tumor
-0.3
413
Tumor
-0.3
431
Tumor
-0.4
285
Tumor
-0.4
983
Tumor
-0.4
727
Tumor
-0.4
1015
Tumor
-0.4
917
Tumor
-0.4
1041
Tumor
-0.4
447
Tumor
-0.4
465
Tumor
-0.5
967
Tumor
-0.5
351
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.