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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRN4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
48.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
39.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
35.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
35.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
35.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
31.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
24.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
20.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STRN4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
72.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
45.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
37.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
32.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
30.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
17.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
0.9
463
Tumor
0.8
131
Tumor
0.8
743
Tumor
0.7
517
Tumor
0.7
967
Tumor
0.7
965
Tumor
0.7
737
Tumor
0.7
745
Tumor
0.6
285
Tumor
0.6
385
Tumor
0.6
283
Tumor
0.6
957
Tumor
0.6
311
Tumor
0.5
975
Tumor
0.5
917
Tumor
0.5
497
Tumor
0.5
425
Tumor
0.5
661
Tumor
0.5
297
Tumor
0.5
573
Tumor
0.5
983
Tumor
0.5
815
Tumor
0.5
1027
Tumor
0.5
943
Tumor
0.5
363
Tumor
0.4
211
Tumor
0.4
537
Tumor
0.4
921
Tumor
0.4
817
Tumor
0.4
963
Tumor
0.3
865
Tumor
0.3
257
Tumor
0.3
525
Tumor
0.3
881
Tumor
0.3
433
Tumor
0.3
951
Tumor
0.3
724
Normal
0.3
125
Tumor
0.3
851
Tumor
0.3
1013
Tumor
0.3
491
Tumor
0.3
857
Tumor
0.3
477
Tumor
0.3
545
Tumor
0.3
271
Tumor
0.3
641
Tumor
0.3
715
Tumor
0.3
813
Tumor
0.3
785
Tumor
0.3
1031
Tumor
0.3
523
Tumor
0.3
647
Tumor
0.3
814
Normal
0.3
923
Tumor
0.3
483
Tumor
0.3
393
Tumor
0.3
498
Normal
0.2
553
Tumor
0.2
343
Tumor
0.2
413
Tumor
0.2
365
Tumor
0.2
455
Tumor
0.2
147
Tumor
0.2
261
Tumor
0.2
916
Normal
0.2
877
Tumor
0.2
141
Tumor
0.2
493
Tumor
0.2
447
Tumor
0.2
231
Tumor
0.2
213
Tumor
0.2
375
Tumor
0.2
536
Normal
0.2
635
Tumor
0.2
818
Normal
0.2
1025
Tumor
0.2
695
Tumor
0.2
953
Tumor
0.2
671
Tumor
0.2
883
Tumor
0.2
527
Tumor
0.2
341
Tumor
0.2
535
Tumor
0.2
481
Tumor
0.2
915
Tumor
0.2
313
Tumor
0.2
221
Tumor
0.2
415
Tumor
0.2
1015
Tumor
0.2
524
Normal
0.2
478
Normal
0.2
1021
Tumor
0.2
727
Tumor
0.2
944
Normal
0.1
411
Tumor
0.1
473
Tumor
0.1
824
Normal
0.1
492
Normal
0.1
331
Tumor
0.1
471
Tumor
0.1
697
Tumor
0.1
816
Normal
0.1
563
Tumor
0.1
127
Tumor
0.1
327
Tumor
0.1
977
Tumor
0.1
445
Tumor
0.1
223
Tumor
0.1
277
Tumor
0.1
332
Normal
0.1
777
Tumor
0.1
852
Normal
0.1
192
Normal
0.1
978
Normal
0.1
571
Tumor
0.1
387
Tumor
0.1
161
Tumor
0.1
224
Normal
0.1
351
Tumor
0.1
938
Normal
0.1
926
Normal
0.1
312
Normal
0.1
755
Tumor
0.1
713
Tumor
0.1
488
Normal
0.1
913
Tumor
0.1
823
Tumor
0.1
516
Normal
0.1
867
Tumor
0.1
1043
Tumor
0.1
858
Normal
0.1
911
Tumor
0.0
395
Tumor
0.0
328
Normal
0.0
572
Normal
0.0
716
Normal
0.0
461
Tumor
0.0
171
Tumor
0.0
367
Tumor
0.0
714
Normal
0.0
427
Tumor
0.0
665
Tumor
0.0
268
Normal
0.0
515
Tumor
0.0
954
Normal
0.0
383
Tumor
0.0
976
Normal
0.0
982
Normal
0.0
696
Normal
0.0
431
Tumor
0.0
284
Normal
0.0
966
Normal
0.0
937
Tumor
0.0
685
Tumor
0.0
262
Normal
0.0
538
Normal
0.0
956
Normal
0.0
1041
Tumor
0.0
558
Normal
0.0
686
Normal
0.0
384
Normal
0.0
468
Normal
0.0
952
Normal
0.0
185
Tumor
0.0
533
Tumor
0.0
955
Tumor
0.0
314
Normal
0.0
741
Tumor
0.0
423
Tumor
0.0
964
Normal
0.0
918
Normal
0.0
435
Tumor
0.0
925
Tumor
0.0
364
Normal
0.0
1032
Normal
0.0
1045
Tumor
0.0
113
Tumor
0.0
778
Normal
0.0
195
Tumor
0.0
722
Normal
0.0
412
Normal
0.0
786
Normal
0.0
137
Tumor
0.0
355
Tumor
0.0
574
Normal
0.0
863
Tumor
0.0
357
Tumor
0.0
981
Tumor
0.0
557
Tumor
0.0
882
Normal
0.0
922
Normal
0.0
627
Tumor
0.0
421
Tumor
0.0
112
Tumor
0.0
416
Normal
0.0
756
Normal
0.0
924
Normal
0.0
984
Normal
0.0
866
Normal
0.0
513
Tumor
0.0
135
Tumor
0.0
434
Normal
0.0
884
Normal
0.0
1028
Normal
0.0
298
Normal
0.0
873
Tumor
0.0
467
Tumor
0.0
376
Normal
0.0
721
Tumor
0.0
1026
Normal
-0.1
361
Tumor
-0.1
518
Normal
-0.1
861
Tumor
-0.1
534
Normal
-0.1
514
Normal
-0.1
217
Tumor
-0.1
672
Normal
-0.1
1014
Normal
-0.1
617
Tumor
-0.1
746
Normal
-0.1
968
Normal
-0.1
878
Normal
-0.1
444
Normal
-0.1
142
Normal
-0.1
228
Normal
-0.1
391
Tumor
-0.1
286
Normal
-0.1
146
Normal
-0.1
864
Normal
-0.1
232
Normal
-0.1
145
Tumor
-0.1
414
Normal
-0.1
1022
Normal
-0.1
1044
Normal
-0.1
494
Normal
-0.1
546
Normal
-0.1
227
Tumor
-0.1
123
Tumor
-0.1
868
Normal
-0.1
466
Normal
-0.1
554
Normal
-0.1
564
Normal
-0.1
1016
Normal
-0.1
272
Normal
-0.1
422
Normal
-0.1
448
Normal
-0.1
663
Tumor
-0.1
188
Normal
-0.1
356
Normal
-0.1
874
Normal
-0.1
267
Tumor
-0.1
126
Normal
-0.1
212
Normal
-0.1
353
Tumor
-0.1
428
Normal
-0.1
187
Tumor
-0.1
1042
Normal
-0.1
744
Normal
-0.1
426
Normal
-0.1
362
Normal
-0.1
464
Normal
-0.1
472
Normal
-0.1
912
Normal
-0.1
352
Normal
-0.1
451
Tumor
-0.1
191
Tumor
-0.1
424
Normal
-0.1
484
Normal
-0.1
392
Normal
-0.2
528
Normal
-0.2
456
Normal
-0.2
128
Normal
-0.2
664
Normal
-0.2
526
Normal
-0.2
487
Tumor
-0.2
366
Normal
-0.2
368
Normal
-0.2
738
Normal
-0.2
218
Normal
-0.2
354
Normal
-0.2
214
Normal
-0.2
344
Normal
-0.2
568
Normal
-0.2
914
Normal
-0.2
432
Normal
-0.2
196
Normal
-0.2
958
Normal
-0.2
648
Normal
-0.2
1046
Normal
-0.2
222
Normal
-0.2
742
Normal
-0.2
124
Normal
-0.2
723
Tumor
-0.2
386
Normal
-0.2
698
Normal
-0.2
862
Normal
-0.2
662
Normal
-0.2
278
Normal
-0.2
114
Normal
-0.2
111
Normal
-0.2
728
Normal
-0.2
446
Normal
-0.2
138
Normal
-0.2
148
Normal
-0.2
136
Normal
-0.2
482
Normal
-0.3
396
Normal
-0.3
666
Normal
-0.3
642
Normal
-0.3
474
Normal
-0.3
258
Normal
-0.3
443
Tumor
-0.3
615
Tumor
-0.3
628
Normal
-0.3
616
Normal
-0.3
358
Normal
-0.3
186
Normal
-0.3
462
Normal
-0.3
636
Normal
-0.3
162
Normal
-0.3
172
Normal
-0.3
132
Normal
-0.3
394
Normal
-0.3
465
Tumor
-0.3
618
Normal
-0.3
452
Normal
-0.3
342
Normal
-0.4
436
Normal
-0.4
388
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
