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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ICAM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
406.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
248.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
218.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
212.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
196.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
193.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
180.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
178.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
170.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
168.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
156.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
154.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
148.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
136.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
131.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
127.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
126.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
125.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
118.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
118.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
116.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
115.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
114.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
102.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
101.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
99.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
98.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
97.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
95.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
95.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
90.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
87.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
85.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
84.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
81.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
79.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
78.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
75.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
74.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
74.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
73.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
71.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
71.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
70.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
69.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
69.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
68.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
68.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
67.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
66.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
66.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
66.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
65.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
65.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
65.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
64.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
64.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
64.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
63.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
63.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
63.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
56.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
56.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
54.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
53.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
52.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
51.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
50.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
50.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
50.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
50.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
49.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
49.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
48.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
48.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
47.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
45.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
45.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
44.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
42.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
40.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
39.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
38.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
37.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
36.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
34.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
31.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
30.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
23.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
22.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ICAM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.2
Number of samples
231
Samples
Sample
Description
TPM
DO45167
0 years, male, NA, stage:2, dead, 1440 days
312.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
298.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
266.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
262.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
262.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
253.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
253.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
238.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
233.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
218.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
192.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
185.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
158.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
149.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
149.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
146.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
143.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
141.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
141.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
140.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
132.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
123.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
121.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
115.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
108.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
103.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
102.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
102.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
100.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
97.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
90.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
87.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
87.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
86.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
84.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
83.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
80.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
79.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
78.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
75.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
71.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
67.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
65.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
65.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
64.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
61.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
61.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
61.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
61.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
56.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
53.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
53.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
53.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
52.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
51.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
48.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
44.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
40.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
38.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
38.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
38.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
37.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
32.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
27.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
20.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
1.6
395
Tumor
1.5
125
Tumor
1.4
983
Tumor
1.3
223
Tumor
1.2
915
Tumor
1.2
943
Tumor
1.1
573
Tumor
1.1
187
Tumor
1.1
367
Tumor
1.1
823
Tumor
1.0
285
Tumor
1.0
721
Tumor
1.0
217
Tumor
1.0
213
Tumor
1.0
375
Tumor
0.9
937
Tumor
0.9
211
Tumor
0.9
661
Tumor
0.9
467
Tumor
0.9
525
Tumor
0.8
387
Tumor
0.8
533
Tumor
0.8
1021
Tumor
0.7
145
Tumor
0.7
311
Tumor
0.7
755
Tumor
0.7
523
Tumor
0.7
1043
Tumor
0.6
867
Tumor
0.6
191
Tumor
0.6
195
Tumor
0.6
1015
Tumor
0.5
724
Normal
0.5
567
Tumor
0.5
413
Tumor
0.5
966
Normal
0.5
455
Tumor
0.5
343
Tumor
0.5
545
Tumor
0.5
537
Tumor
0.5
113
Tumor
0.4
434
Normal
0.4
493
Tumor
0.4
535
Tumor
0.4
861
Tumor
0.4
451
Tumor
0.4
857
Tumor
0.4
745
Tumor
0.4
257
Tumor
0.4
557
Tumor
0.3
536
Normal
0.3
327
Tumor
0.3
524
Normal
0.3
952
Normal
0.3
923
Tumor
0.3
515
Tumor
0.2
135
Tumor
0.2
447
Tumor
0.2
478
Normal
0.2
192
Normal
0.2
538
Normal
0.2
224
Normal
0.2
814
Normal
0.2
218
Normal
0.2
815
Tumor
0.2
262
Normal
0.2
344
Normal
0.2
487
Tumor
0.1
498
Normal
0.1
955
Tumor
0.1
917
Tumor
0.1
914
Normal
0.1
916
Normal
0.1
1028
Normal
0.1
954
Normal
0.1
393
Tumor
0.1
813
Tumor
0.1
142
Normal
0.1
685
Tumor
0.1
1044
Normal
0.1
124
Normal
0.1
527
Tumor
0.1
978
Normal
0.0
981
Tumor
0.0
816
Normal
0.0
283
Tumor
0.0
686
Normal
0.0
228
Normal
0.0
778
Normal
0.0
415
Tumor
0.0
913
Tumor
0.0
365
Tumor
0.0
126
Normal
0.0
852
Normal
0.0
777
Tumor
0.0
212
Normal
0.0
286
Normal
0.0
474
Normal
0.0
976
Normal
0.0
738
Normal
0.0
696
Normal
0.0
944
Normal
0.0
728
Normal
0.0
444
Normal
0.0
1025
Tumor
0.0
492
Normal
0.0
386
Normal
0.0
431
Tumor
0.0
368
Normal
0.0
526
Normal
0.0
461
Tumor
0.0
185
Tumor
-0.1
968
Normal
-0.1
284
Normal
-0.1
468
Normal
-0.1
141
Tumor
-0.1
558
Normal
-0.1
188
Normal
-0.1
563
Tumor
-0.1
874
Normal
-0.1
963
Tumor
-0.1
642
Normal
-0.1
448
Normal
-0.1
1026
Normal
-0.1
858
Normal
-0.1
366
Normal
-0.1
456
Normal
-0.1
297
Tumor
-0.1
425
Tumor
-0.1
481
Tumor
-0.1
977
Tumor
-0.1
723
Tumor
-0.1
518
Normal
-0.1
528
Normal
-0.1
514
Normal
-0.1
554
Normal
-0.1
396
Normal
-0.1
385
Tumor
-0.2
1016
Normal
-0.2
384
Normal
-0.2
268
Normal
-0.2
878
Normal
-0.2
863
Tumor
-0.2
427
Tumor
-0.2
361
Tumor
-0.2
574
Normal
-0.2
432
Normal
-0.2
984
Normal
-0.2
918
Normal
-0.2
884
Normal
-0.2
546
Normal
-0.2
616
Normal
-0.2
446
Normal
-0.2
882
Normal
-0.2
364
Normal
-0.2
824
Normal
-0.2
662
Normal
-0.2
1014
Normal
-0.2
672
Normal
-0.2
494
Normal
-0.2
137
Tumor
-0.2
926
Normal
-0.2
818
Normal
-0.2
722
Normal
-0.2
1046
Normal
-0.2
111
Normal
-0.2
114
Normal
-0.2
744
Normal
-0.2
352
Normal
-0.2
376
Normal
-0.2
956
Normal
-0.3
716
Normal
-0.3
443
Tumor
-0.3
362
Normal
-0.3
1022
Normal
-0.3
416
Normal
-0.3
466
Normal
-0.3
214
Normal
-0.3
924
Normal
-0.3
138
Normal
-0.3
221
Tumor
-0.3
737
Tumor
-0.3
471
Tumor
-0.3
862
Normal
-0.3
462
Normal
-0.3
513
Tumor
-0.3
922
Normal
-0.3
564
Normal
-0.3
392
Normal
-0.3
147
Tumor
-0.3
433
Tumor
-0.3
112
Tumor
-0.3
911
Tumor
-0.3
272
Normal
-0.3
488
Normal
-0.3
714
Normal
-0.3
383
Tumor
-0.3
866
Normal
-0.3
136
Normal
-0.3
452
Normal
-0.3
982
Normal
-0.3
742
Normal
-0.3
975
Tumor
-0.3
648
Normal
-0.3
355
Tumor
-0.3
627
Tumor
-0.3
222
Normal
-0.4
483
Tumor
-0.4
666
Normal
-0.4
414
Normal
-0.4
232
Normal
-0.4
464
Normal
-0.4
258
Normal
-0.4
534
Normal
-0.4
482
Normal
-0.4
868
Normal
-0.4
132
Normal
-0.4
491
Tumor
-0.4
785
Tumor
-0.4
628
Normal
-0.4
1041
Tumor
-0.4
958
Normal
-0.4
424
Normal
-0.4
472
Normal
-0.4
873
Tumor
-0.4
426
Normal
-0.4
912
Normal
-0.4
196
Normal
-0.4
568
Normal
-0.4
938
Normal
-0.4
148
Normal
-0.4
356
Normal
-0.4
964
Normal
-0.4
881
Tumor
-0.4
1031
Tumor
-0.4
146
Normal
-0.4
312
Normal
-0.4
1042
Normal
-0.4
746
Normal
-0.4
332
Normal
-0.4
421
Tumor
-0.4
864
Normal
-0.4
516
Normal
-0.4
412
Normal
-0.4
671
Tumor
-0.4
698
Normal
-0.4
877
Tumor
-0.4
665
Tumor
-0.4
277
Tumor
-0.4
354
Normal
-0.4
477
Tumor
-0.4
636
Normal
-0.4
328
Normal
-0.5
391
Tumor
-0.5
953
Tumor
-0.5
756
Normal
-0.5
817
Tumor
-0.5
172
Normal
-0.5
697
Tumor
-0.5
497
Tumor
-0.5
883
Tumor
-0.5
664
Normal
-0.5
394
Normal
-0.5
572
Normal
-0.5
388
Normal
-0.5
967
Tumor
-0.5
436
Normal
-0.5
186
Normal
-0.5
865
Tumor
-0.5
422
Normal
-0.6
786
Normal
-0.6
615
Tumor
-0.6
484
Normal
-0.6
128
Normal
-0.6
463
Tumor
-0.6
342
Normal
-0.6
517
Tumor
-0.6
428
Normal
-0.6
131
Tumor
-0.6
298
Normal
-0.6
278
Normal
-0.6
162
Normal
-0.6
663
Tumor
-0.6
261
Tumor
-0.6
925
Tumor
-0.6
271
Tumor
-0.7
553
Tumor
-0.7
1045
Tumor
-0.7
741
Tumor
-0.7
358
Normal
-0.7
1032
Normal
-0.7
951
Tumor
-0.7
314
Normal
-0.7
618
Normal
-0.8
161
Tumor
-0.8
353
Tumor
-0.8
743
Tumor
-0.8
957
Tumor
-0.8
617
Tumor
-0.8
715
Tumor
-0.9
921
Tumor
-0.9
713
Tumor
-0.9
227
Tumor
-0.9
635
Tumor
-0.9
423
Tumor
-1.0
313
Tumor
-1.0
123
Tumor
-1.0
267
Tumor
-1.1
727
Tumor
-1.1
465
Tumor
-1.1
331
Tumor
-1.1
231
Tumor
-1.1
571
Tumor
-1.2
171
Tumor
-1.2
641
Tumor
-1.3
363
Tumor
-1.3
351
Tumor
-1.3
445
Tumor
-1.3
127
Tumor
-1.3
1027
Tumor
-1.3
695
Tumor
-1.4
1013
Tumor
-1.5
341
Tumor
-1.5
647
Tumor
-1.6
411
Tumor
-1.6
435
Tumor
-1.7
473
Tumor
-1.7
357
Tumor
-1.7
965
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
