MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:43.2 nTPM
GTEx:26.7 nTPM
FANTOM5:48.5 Scaled Tags Per Million
Pig:34.6 nTPM
Mouse:73.6 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2219 Male, age 76, both hemispheres 37.3
2019 Male, age 18, unknown 34.9
2411 Female, age 72, unknown 34.3
1827 Male, age 72, unknown 33.6
1870 Female, age 42, unknown 29.2
2828 Female, age 72, unknown 29.0
1833 Male, age 53, unknown 28.5
1830 Male, age 51, unknown 26.2
2586 Male, age 75, left hemisphere 23.4
2666 Male, age 74, left hemisphere 23.2
Dorsal raphe nucleus
nTPM: 35.9
2298 Female, age 72, unknown 47.3
2047 Male, age 72, unknown 38.5
2750 Male, age 76, both hemispheres 33.9
1828 Male, age 53, unknown 32.5
2016 Female, age 72, unknown 27.1
Inferior colliculus
nTPM: 30.3
2097 Female, age 72, unknown 33.7
2849 Male, age 72, unknown 29.8
1848 Female, age 42, unknown 29.4
1890 Male, age 53, unknown 28.2
Median raphe nucleus
nTPM: 43.2
2220 Male, age 76, midline 43.2
Periaquaductal grey, anterior
nTPM: 37.7
1947 Male, age 18, unknown 39.2
1795 Male, age 51, unknown 37.8
2502 Female, age 75, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 29.9
1840 Male, age 53, unknown 34.5
2850 Male, age 76, both hemispheres 30.2
1831 Male, age 72, unknown 27.6
2464 Female, age 72, unknown 27.3
Periaquaductal grey, lateral
nTPM: 32.1
2272 Male, age 74, both hemispheres 39.3
2140 Male, age 76, both hemispheres 30.2
2053 Male, age 18, unknown 26.7
Pretectal area
nTPM: 35.1
1944 Female, age 72, unknown 41.1
2224 Female, age 72, unknown 39.9
2007 Male, age 72, unknown 39.5
1817 Female, age 42, unknown 38.3
1816 Male, age 51, unknown 37.6
2667 Female, age 75, unknown 37.2
2273 Male, age 74, both hemispheres 34.3
2825 Male, age 18, unknown 32.2
1815 Male, age 53, unknown 31.4
2407 Male, age 75, both hemispheres 27.3
2316 Male, age 76, right hemisphere 26.8
Red nucleus
nTPM: 28.7
2785 Male, age 18, unknown 33.2
1821 Female, age 72, unknown 33.1
2725 Female, age 75, unknown 31.2
2769 Male, age 72, unknown 30.4
2588 Male, age 74, left hemisphere 29.9
2503 Female, age 72, unknown 29.0
2227 Male, age 72, unknown 28.7
1954 Female, age 42, unknown 27.8
1904 Male, age 53, unknown 26.0
1865 Male, age 51, unknown 25.8
2584 Male, age 75, left hemisphere 25.6
2823 Male, age 76, right hemisphere 23.3
Substantia nigra
nTPM: 34.5
1916 Female, age 42, unknown 46.5
1941 Male, age 53, unknown 44.1
1851 Male, age 51, unknown 39.4
1889 Female, age 72, unknown 39.3
2665 Male, age 74, both hemispheres 32.9
2241 Male, age 72, unknown 32.2
2590 Female, age 75, unknown 29.7
2699 Male, age 18, unknown 28.0
2583 Male, age 75, right hemisphere 27.2
2409 Female, age 72, unknown 25.5
Superior colliculus
nTPM: 30.4
2087 Female, age 72, unknown 35.3
1796 Male, age 53, unknown 34.9
2587 Male, age 74, left hemisphere 33.5
1895 Male, age 76, right hemisphere 33.0
2261 Male, age 18, unknown 32.6
2668 Female, age 75, unknown 30.6
1839 Male, age 51, unknown 29.5
2664 Male, age 75, both hemispheres 26.8
1913 Female, age 42, unknown 25.2
1995 Male, age 72, unknown 22.8
Ventral tegmental area
nTPM: 35.0
2218 Male, age 76, both hemispheres 43.9
1915 Female, age 42, unknown 36.9
2410 Female, age 72, unknown 35.9
1942 Male, age 51, unknown 34.9
2223 Female, age 72, unknown 29.4
2021 Male, age 53, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.7
Samples: 139

Max nTPM: 77.9
Min nTPM: 14.1
Std nTPM: 10.3
Median nTPM: 23.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 77.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 53.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 51.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 48.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 45.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 44.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 42.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 42.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.5
FF:10158-103A5 76 years, female 48.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 39.6
Min nTPM: 27.3
Sample A Female 39.6
Sample B Female 27.3
Sample C Male 33.8
Sample D Male 28.7
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 27.9
Sample A Female 40.8
Sample B Female 27.9
Sample C Male 35.4
Sample D Male 29.4
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 26.8
Min nTPM: 23.4
Sample B Female 24.5
Sample C Male 26.8
Sample D Male 23.4
Superior colliculi
nTPM: 34.6
Samples: 4

Max nTPM: 37.6
Min nTPM: 31.6
Sample A Female 37.2
Sample B Female 32.0
Sample C Male 37.6
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 73.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 73.6
Samples: 4

Max nTPM: 77.5
Min nTPM: 70.4
Sample A Male 77.5
Sample B Male 70.4
Sample C Female 71.7
Sample D Female 74.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
69736412 Antisense, RP_050503_04_G03, Mouse strain C57BL/6J (56 days, male) 7.5
70919525 Antisense, RP_050713_01_E06, Mouse strain C57BL/6J (56 days, male) 0.8

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