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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
270.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
252.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
225.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
218.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
215.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
197.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
194.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
189.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
183.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
182.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
176.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
175.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
175.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
175.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
172.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
162.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
155.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
154.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
151.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
148.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
145.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
145.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
140.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
139.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
138.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
138.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
138.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
136.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
135.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
135.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
134.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
132.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
131.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
129.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
129.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
129.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
129.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
129.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
129.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
128.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
127.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
126.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
126.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
121.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
121.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
121.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
121.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
121.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
120.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
119.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
119.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
119.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
116.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
115.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
115.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
115.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
114.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
113.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
112.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
112.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
112.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
112.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
112.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
112.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
111.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
110.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
110.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
109.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
109.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
109.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
107.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
106.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
106.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
105.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
104.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
104.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
103.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
102.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
102.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
102.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
102.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
101.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
101.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
99.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
99.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
99.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
98.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
97.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
97.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
96.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
95.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
94.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
94.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
94.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
94.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
93.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
92.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
92.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
92.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
91.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
91.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
91.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
89.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
89.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
89.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
89.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
89.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
89.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
89.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
88.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
88.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
88.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
88.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
87.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
87.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
87.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
87.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
86.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
85.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
83.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
83.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
83.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
83.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
83.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
83.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
82.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
80.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
80.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
80.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
79.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
79.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
79.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
79.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
79.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
78.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
78.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
78.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
78.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
78.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
78.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
78.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
77.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
77.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
76.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
76.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
76.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
75.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
75.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
74.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
74.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
74.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
74.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
73.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
73.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
73.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
72.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
72.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
72.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
72.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
72.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
72.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
71.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
71.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
71.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
71.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
71.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
71.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
70.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
70.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
69.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
69.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
68.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
68.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
68.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
67.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
67.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
67.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
67.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
67.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
67.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
66.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
66.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
65.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
65.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
65.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
65.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
65.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
65.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
65.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
65.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
64.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
64.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
63.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
63.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
63.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
63.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
63.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
63.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
63.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
62.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
62.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
62.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
62.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
62.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
62.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
61.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
61.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
61.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
61.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
61.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
61.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
60.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
60.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
60.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
60.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
60.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
60.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
60.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
59.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
59.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
59.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
59.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
59.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
58.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
58.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
57.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
56.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
56.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
56.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
56.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
55.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
55.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
55.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
55.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
55.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
55.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
55.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
55.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
55.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
54.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
54.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
54.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
54.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
53.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
53.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
53.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
52.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
52.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
52.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
52.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
52.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
52.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
51.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
51.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
51.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
50.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
50.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
49.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
49.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
49.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
48.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
48.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
48.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
47.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
47.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
46.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
43.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
42.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
41.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
40.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
39.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
38.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
36.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
35.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
30.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
76.8
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
259.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
241.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
231.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
208.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
197.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
191.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
175.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
173.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
172.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
163.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
161.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
155.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
147.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
145.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
141.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
140.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
139.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
138.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
137.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
136.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
135.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
134.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
132.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
127.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
125.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
121.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
120.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
116.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
115.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
115.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
114.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
114.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
113.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
113.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
113.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
112.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
111.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
111.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
111.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
109.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
108.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
108.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
103.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
103.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
102.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
100.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
100.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
97.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
96.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
96.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
95.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
95.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
94.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
94.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
94.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
94.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
93.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
93.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
93.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
93.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
92.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
91.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
91.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
90.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
88.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
87.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
87.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
87.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
86.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
86.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
84.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
84.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
83.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
83.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
83.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
83.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
82.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
82.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
82.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
80.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
80.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
79.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
78.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
77.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
77.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
75.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
75.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
75.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
75.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
73.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
73.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
72.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
72.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
72.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
71.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
71.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
71.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
70.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
69.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
69.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
69.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
69.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
68.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
68.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
67.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
67.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
66.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
65.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
64.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
64.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
64.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
63.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
62.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
61.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
61.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
61.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
60.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
60.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
60.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
60.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
59.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
59.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
59.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
59.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
58.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
58.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
58.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
57.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
57.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
56.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
56.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
55.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
55.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
55.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
55.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
55.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
53.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
53.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
53.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
53.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
51.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
50.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
50.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
49.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
49.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
48.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
48.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
47.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
46.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
46.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
44.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
42.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
42.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
41.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
39.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
39.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
38.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
36.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
30.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.4
487
Tumor
1.3
937
Tumor
1.2
925
Tumor
1.2
663
Tumor
1.2
865
Tumor
1.1
513
Tumor
1.0
473
Tumor
0.9
635
Tumor
0.9
951
Tumor
0.9
567
Tumor
0.9
953
Tumor
0.8
965
Tumor
0.8
527
Tumor
0.8
1013
Tumor
0.8
515
Tumor
0.7
695
Tumor
0.7
727
Tumor
0.7
355
Tumor
0.7
112
Tumor
0.7
883
Tumor
0.7
283
Tumor
0.7
755
Tumor
0.7
477
Tumor
0.7
497
Tumor
0.7
685
Tumor
0.7
231
Tumor
0.7
697
Tumor
0.6
1045
Tumor
0.6
573
Tumor
0.6
1015
Tumor
0.6
923
Tumor
0.6
873
Tumor
0.6
777
Tumor
0.6
1027
Tumor
0.6
367
Tumor
0.6
443
Tumor
0.5
525
Tumor
0.5
571
Tumor
0.5
341
Tumor
0.5
395
Tumor
0.5
943
Tumor
0.5
745
Tumor
0.5
737
Tumor
0.5
661
Tumor
0.4
425
Tumor
0.4
313
Tumor
0.4
911
Tumor
0.4
493
Tumor
0.4
375
Tumor
0.4
1021
Tumor
0.4
823
Tumor
0.4
861
Tumor
0.3
915
Tumor
0.3
357
Tumor
0.3
161
Tumor
0.3
171
Tumor
0.3
361
Tumor
0.3
123
Tumor
0.3
983
Tumor
0.3
125
Tumor
0.3
955
Tumor
0.3
813
Tumor
0.3
387
Tumor
0.3
351
Tumor
0.3
741
Tumor
0.3
484
Normal
0.3
1041
Tumor
0.2
327
Tumor
0.2
483
Tumor
0.2
563
Tumor
0.2
257
Tumor
0.2
913
Tumor
0.2
981
Tumor
0.2
431
Tumor
0.2
127
Tumor
0.2
415
Tumor
0.2
433
Tumor
0.2
977
Tumor
0.2
391
Tumor
0.2
137
Tumor
0.2
912
Normal
0.2
721
Tumor
0.2
724
Normal
0.1
141
Tumor
0.1
554
Normal
0.1
1022
Normal
0.1
944
Normal
0.1
383
Tumor
0.1
978
Normal
0.1
1028
Normal
0.1
465
Tumor
0.1
1026
Normal
0.1
365
Tumor
0.1
472
Normal
0.1
535
Tumor
0.1
963
Tumor
0.1
423
Tumor
0.1
615
Tumor
0.1
267
Tumor
0.1
916
Normal
0.1
714
Normal
0.1
647
Tumor
0.1
863
Tumor
0.1
984
Normal
0.1
524
Normal
0.1
728
Normal
0.0
1014
Normal
0.0
474
Normal
0.0
537
Tumor
0.0
862
Normal
0.0
964
Normal
0.0
518
Normal
0.0
514
Normal
0.0
516
Normal
0.0
617
Tumor
0.0
954
Normal
0.0
311
Tumor
0.0
463
Tumor
0.0
967
Tumor
0.0
778
Normal
0.0
534
Normal
0.0
918
Normal
0.0
746
Normal
0.0
924
Normal
0.0
526
Normal
0.0
455
Tumor
0.0
482
Normal
0.0
867
Tumor
0.0
213
Tumor
0.0
536
Normal
0.0
857
Tumor
0.0
814
Normal
0.0
786
Normal
0.0
966
Normal
0.0
538
Normal
0.0
922
Normal
0.0
723
Tumor
0.0
488
Normal
0.0
696
Normal
0.0
958
Normal
0.0
864
Normal
0.0
211
Tumor
0.0
478
Normal
0.0
228
Normal
0.0
185
Tumor
0.0
878
Normal
0.0
528
Normal
0.0
738
Normal
0.0
866
Normal
0.0
461
Tumor
0.0
884
Normal
0.0
421
Tumor
0.0
491
Tumor
0.0
1032
Normal
-0.1
546
Normal
-0.1
938
Normal
-0.1
462
Normal
-0.1
412
Normal
-0.1
824
Normal
-0.1
686
Normal
-0.1
627
Tumor
-0.1
492
Normal
-0.1
926
Normal
-0.1
557
Tumor
-0.1
968
Normal
-0.1
742
Normal
-0.1
982
Normal
-0.1
427
Tumor
-0.1
286
Normal
-0.1
448
Normal
-0.1
816
Normal
-0.1
756
Normal
-0.1
523
Tumor
-0.1
416
Normal
-0.1
451
Tumor
-0.1
882
Normal
-0.1
1044
Normal
-0.1
957
Tumor
-0.1
494
Normal
-0.1
212
Normal
-0.1
498
Normal
-0.1
1016
Normal
-0.1
445
Tumor
-0.1
545
Tumor
-0.1
481
Tumor
-0.1
413
Tumor
-0.1
471
Tumor
-0.1
1042
Normal
-0.1
852
Normal
-0.1
364
Normal
-0.1
1046
Normal
-0.1
976
Normal
-0.1
356
Normal
-0.1
956
Normal
-0.1
147
Tumor
-0.1
223
Tumor
-0.1
284
Normal
-0.1
277
Tumor
-0.1
858
Normal
-0.2
665
Tumor
-0.2
785
Tumor
-0.2
297
Tumor
-0.2
558
Normal
-0.2
952
Normal
-0.2
716
Normal
-0.2
698
Normal
-0.2
328
Normal
-0.2
572
Normal
-0.2
135
Tumor
-0.2
385
Tumor
-0.2
113
Tumor
-0.2
868
Normal
-0.2
553
Tumor
-0.2
411
Tumor
-0.2
648
Normal
-0.2
722
Normal
-0.2
743
Tumor
-0.2
447
Tumor
-0.2
815
Tumor
-0.2
517
Tumor
-0.2
343
Tumor
-0.2
874
Normal
-0.3
818
Normal
-0.3
368
Normal
-0.3
224
Normal
-0.3
128
Normal
-0.3
148
Normal
-0.3
568
Normal
-0.3
744
Normal
-0.3
195
Tumor
-0.3
331
Tumor
-0.3
432
Normal
-0.3
261
Tumor
-0.3
914
Normal
-0.3
628
Normal
-0.3
436
Normal
-0.3
142
Normal
-0.3
222
Normal
-0.3
564
Normal
-0.3
917
Tumor
-0.3
713
Tumor
-0.3
574
Normal
-0.3
217
Tumor
-0.3
466
Normal
-0.3
435
Tumor
-0.3
218
Normal
-0.3
162
Normal
-0.4
444
Normal
-0.4
353
Tumor
-0.4
298
Normal
-0.4
434
Normal
-0.4
111
Normal
-0.4
172
Normal
-0.4
616
Normal
-0.4
392
Normal
-0.4
384
Normal
-0.4
921
Tumor
-0.4
376
Normal
-0.4
362
Normal
-0.4
227
Tumor
-0.4
363
Tumor
-0.4
422
Normal
-0.4
196
Normal
-0.4
232
Normal
-0.4
188
Normal
-0.4
268
Normal
-0.4
1031
Tumor
-0.4
394
Normal
-0.4
396
Normal
-0.4
278
Normal
-0.4
464
Normal
-0.4
272
Normal
-0.4
642
Normal
-0.4
114
Normal
-0.4
388
Normal
-0.4
666
Normal
-0.4
446
Normal
-0.4
1043
Tumor
-0.4
881
Tumor
-0.4
452
Normal
-0.4
386
Normal
-0.4
664
Normal
-0.4
132
Normal
-0.4
138
Normal
-0.4
136
Normal
-0.5
124
Normal
-0.5
258
Normal
-0.5
426
Normal
-0.5
126
Normal
-0.5
468
Normal
-0.5
314
Normal
-0.5
358
Normal
-0.5
636
Normal
-0.5
366
Normal
-0.5
641
Tumor
-0.5
214
Normal
-0.5
285
Tumor
-0.5
662
Normal
-0.5
342
Normal
-0.5
221
Tumor
-0.5
618
Normal
-0.5
262
Normal
-0.5
456
Normal
-0.5
352
Normal
-0.5
186
Normal
-0.5
428
Normal
-0.5
312
Normal
-0.5
344
Normal
-0.5
424
Normal
-0.5
332
Normal
-0.5
975
Tumor
-0.5
414
Normal
-0.6
671
Tumor
-0.6
672
Normal
-0.6
817
Tumor
-0.6
187
Tumor
-0.6
877
Tumor
-0.6
715
Tumor
-0.6
851
Tumor
-0.6
467
Tumor
-0.6
354
Normal
-0.6
146
Normal
-0.7
1025
Tumor
-0.7
192
Normal
-0.8
145
Tumor
-0.8
271
Tumor
-0.8
393
Tumor
-0.9
191
Tumor
-0.9
131
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
