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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
213.1
nTPM
FANTOM5:
336.7
Scaled Tags Per Million
Pig:
169.2
nTPM
Allen mouse:
1.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
213.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 144.1
1984
Male, age 76, both hemispheres
158.9
2188
Female, age 91, both hemispheres
154.7
2301
Female, age 85, both hemispheres
154.3
2090
Male, age 80, both hemispheres
108.4
Dorsal cochlear nucleus nTPM: 136.3
2370
Male, age 61, both hemispheres
150.0
2187
Female, age 91, both hemispheres
148.2
2802
Male, age 74, right hemisphere
145.9
2378
Male, age 80, both hemispheres
126.2
2058
Male, age 76, both hemispheres
111.2
Dorsal tegmental nucleus nTPM: 136.0
2083
Male, age 80, both hemispheres
158.2
2326
Male, age 74, both hemispheres
132.2
1936
Male, age 76, left hemisphere
128.6
2358
Male, age 61, both hemispheres
124.9
Dorsolateral tegmental area nTPM: 129.9
2654
Male, age 80, both hemispheres
158.8
2141
Male, age 76, both hemispheres
138.5
2751
Female, age 85, both hemispheres
120.9
2337
Male, age 61, both hemispheres
116.0
2360
Male, age 74, both hemispheres
115.4
Kolliker-Fuse nucleus nTPM: 156.6
2793
Female, age 91, left hemisphere
192.1
2163
Male, age 80, both hemispheres
169.7
2315
Male, age 76, right hemisphere
108.1
Lateral lemniscal nuclei nTPM: 198.6
2169
Male, age 76, both hemispheres
247.5
2036
Male, age 80, both hemispheres
198.4
2746
Female, age 85, left hemisphere
198.3
2453
Male, age 74, right hemisphere
184.1
2320
Female, age 91, left hemisphere
164.8
Lateral parabrachial nucleus nTPM: 151.3
2139
Female, age 85, right hemisphere
211.7
2013
Male, age 80, both hemispheres
154.7
2790
Male, age 61, both hemispheres
132.5
2792
Male, age 76, both hemispheres
106.2
Lateral vestibular nucleus nTPM: 167.2
2184
Male, age 76, both hemispheres
181.6
2311
Male, age 80, both hemispheres
152.7
Locus coeruleus nTPM: 152.4
2720
Male, age 74, both hemispheres
181.3
2014
Male, age 55, unknown
162.8
2162
Male, age 80, both hemispheres
157.8
2317
Female, age 72, unknown
150.9
2123
Female, age 91, both hemispheres
146.3
1980
Male, age 76, both hemispheres
137.9
2788
Male, age 74, unknown
130.0
Medial parabrachial nucleus nTPM: 150.7
2854
Male, age 80, both hemispheres
165.1
2156
Male, age 61, both hemispheres
154.1
2170
Female, age 91, both hemispheres
151.2
2786
Male, age 76, both hemispheres
150.0
2463
Female, age 85, right hemisphere
133.2
Medial periolivary nuclei nTPM: 178.2
2171
Female, age 85, both hemispheres
279.2
2063
Male, age 76, both hemispheres
205.7
2458
Female, age 91, both hemispheres
146.0
2791
Male, age 74, right hemisphere
142.1
2081
Male, age 80, both hemispheres
118.0
Motor facial nucleus nTPM: 185.2
2062
Male, age 76, both hemispheres
241.0
2697
Female, age 85, both hemispheres
211.2
2327
Male, age 80, both hemispheres
186.2
2365
Male, age 74, right hemisphere
182.7
2795
Female, age 91, both hemispheres
158.7
2126
Male, age 61, both hemispheres
131.7
Motor trigeminal nucleus nTPM: 158.4
2560
Male, age 74, both hemispheres
174.1
2079
Male, age 80, both hemispheres
163.1
2309
Male, age 76, both hemispheres
158.9
2335
Male, age 61, both hemispheres
152.3
2321
Female, age 91, both hemispheres
143.6
Nuclei of the trapezoid body nTPM: 204.4
2735
Female, age 85, both hemispheres
248.6
1983
Male, age 76, both hemispheres
225.3
2159
Male, age 61, both hemispheres
222.7
2166
Male, age 80, both hemispheres
177.5
2368
Female, age 91, both hemispheres
148.2
Nucleus raphe magnus nTPM: 209.9
2172
Female, age 85, both hemispheres
294.2
2160
Male, age 61, both hemispheres
230.7
2455
Male, age 74, both hemispheres
197.4
2051
Male, age 76, both hemispheres
190.7
2328
Male, age 80, both hemispheres
190.6
2459
Female, age 91, both hemispheres
156.0
Paramedian reticular nucleus nTPM: 139.4
2050
Female, age 85, both hemispheres
197.3
2057
Male, age 80, both hemispheres
136.2
2313
Male, age 61, both hemispheres
136.1
2052
Male, age 76, both hemispheres
88.1
Pedunculopontine tegmental nucleus nTPM: 132.0
2334
Male, age 80, both hemispheres
141.8
1921
Female, age 85, both hemispheres
141.3
2338
Male, age 61, both hemispheres
112.9
Pontine nuclei nTPM: 213.1
2787
Female, age 85, both hemispheres
328.5
1863
Male, age 55, unknown
285.1
1968
Male, age 76, left hemisphere
242.1
2109
Female, age 72, unknown
198.0
2727
Male, age 61, right hemisphere
175.2
2454
Male, age 74, left hemisphere
169.5
2115
Male, age 80, left hemisphere
156.2
2319
Female, age 91, both hemispheres
150.0
Pontine raphe nucleus nTPM: 149.0
2122
Female, age 85, midline
163.0
2853
Male, age 76, midline
134.9
Posteroventral cochlear nucleus nTPM: 132.0
2752
Female, age 85, both hemispheres
162.7
2070
Male, age 76, both hemispheres
142.0
2371
Male, age 61, both hemispheres
139.3
2135
Female, age 91, both hemispheres
121.5
2341
Male, age 80, both hemispheres
94.4
Principal sensory trigeminal nucleus nTPM: 181.4
2158
Male, age 61, both hemispheres
216.6
2008
Male, age 80, left hemisphere
184.4
2324
Male, age 76, both hemispheres
165.5
2367
Female, age 91, left hemisphere
159.2
Reticular pontine nucleus, caudal nTPM: 167.2
2332
Male, age 80, right hemisphere
198.0
2092
Male, age 76, both hemispheres
183.3
2457
Female, age 91, both hemispheres
150.7
2559
Male, age 74, both hemispheres
136.6
Reticular pontine nucleus, oral nTPM: 156.1
2012
Female, age 85, both hemispheres
175.1
2366
Female, age 91, both hemispheres
173.1
2361
Male, age 74, both hemispheres
150.5
2167
Male, age 76, both hemispheres
150.3
1939
Male, age 80, both hemispheres
131.6
Reticulotegmental nucleus nTPM: 154.7
2325
Male, age 76, both hemispheres
171.6
2452
Male, age 74, both hemispheres
160.4
2333
Male, age 80, both hemispheres
146.5
2322
Female, age 91, both hemispheres
140.4
Spinal trigeminal nucleus, oral nTPM: 163.6
1978
Male, age 76, both hemispheres
177.1
2164
Male, age 80, both hemispheres
158.5
2737
Female, age 85, both hemispheres
155.2
Subcoeruleus area nTPM: 155.1
2089
Male, age 76, left hemisphere
173.0
1958
Male, age 80, both hemispheres
170.7
2323
Female, age 91, left hemisphere
166.2
2451
Male, age 74, both hemispheres
154.2
2369
Female, age 85, left hemisphere
111.6
Superior olive nTPM: 177.2
1875
Female, age 85, both hemispheres
226.6
2329
Male, age 80, right hemisphere
181.2
2561
Female, age 91, both hemispheres
162.5
2364
Male, age 74, right hemisphere
158.2
2020
Male, age 76, both hemispheres
157.3
Ventral periolivary nuclei nTPM: 181.2
2165
Male, age 80, both hemispheres
218.5
2130
Female, age 85, both hemispheres
210.6
2794
Female, age 91, left hemisphere
155.6
2023
Male, age 76, both hemispheres
139.9
Ventrolateral tegmental area, A5 NE cell group nTPM: 173.5
1959
Male, age 76, both hemispheres
196.5
2449
Male, age 74, both hemispheres
186.6
2161
Male, age 80, both hemispheres
178.4
2840
Female, age 85, both hemispheres
174.9
2359
Male, age 61, both hemispheres
160.5
2456
Female, age 91, both hemispheres
143.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
169.2
Pig sample
Sample description
nTPM
Pons nTPM: 169.2
Samples: 4
Max nTPM: 224.7
Min nTPM: 135.7
Sample A
Female
224.7
Sample B
Female
136.1
Sample C
Male
135.7
Sample D
Male
180.2
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
