We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAPOLA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
113.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
110.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
105.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
77.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
70.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
70.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
63.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
61.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
60.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
58.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
57.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
56.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
56.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
55.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
55.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
53.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
52.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
49.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
48.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
47.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
45.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
44.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
44.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
44.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
43.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
43.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
43.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
42.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
41.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
40.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
39.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
39.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
39.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
38.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
36.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
36.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
34.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
32.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
29.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
29.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
26.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
25.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
22.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
19.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAPOLA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.8
Number of samples
231
Samples
Sample
Description
TPM
DO50778
0 years, male, NA, stage:4, alive, 630 days
76.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
71.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
66.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
65.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
61.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
61.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
61.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
57.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
56.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
56.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
55.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
55.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
54.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
54.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
54.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
53.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
51.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
51.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
50.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
50.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
49.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
49.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
49.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
49.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
48.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
48.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
48.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
46.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
46.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
46.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
46.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
46.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
45.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
45.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
42.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
41.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
41.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
41.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
40.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
35.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
35.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
34.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
34.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
33.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
31.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
31.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
31.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
30.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
29.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
29.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
29.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
27.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
24.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.1
131
Tumor
1.1
497
Tumor
1.0
865
Tumor
1.0
967
Tumor
0.9
743
Tumor
0.9
473
Tumor
0.9
411
Tumor
0.9
221
Tumor
0.8
463
Tumor
0.8
661
Tumor
0.8
431
Tumor
0.7
425
Tumor
0.7
277
Tumor
0.7
227
Tumor
0.6
943
Tumor
0.6
385
Tumor
0.6
445
Tumor
0.6
671
Tumor
0.6
815
Tumor
0.6
863
Tumor
0.6
413
Tumor
0.5
527
Tumor
0.5
877
Tumor
0.5
975
Tumor
0.5
641
Tumor
0.5
695
Tumor
0.5
523
Tumor
0.5
851
Tumor
0.4
977
Tumor
0.4
553
Tumor
0.4
471
Tumor
0.4
817
Tumor
0.4
953
Tumor
0.4
135
Tumor
0.4
533
Tumor
0.4
937
Tumor
0.4
271
Tumor
0.4
951
Tumor
0.4
663
Tumor
0.3
343
Tumor
0.3
367
Tumor
0.3
737
Tumor
0.3
881
Tumor
0.3
283
Tumor
0.3
713
Tumor
0.3
223
Tumor
0.3
357
Tumor
0.3
351
Tumor
0.3
433
Tumor
0.3
427
Tumor
0.3
813
Tumor
0.3
141
Tumor
0.3
697
Tumor
0.3
467
Tumor
0.3
267
Tumor
0.3
217
Tumor
0.3
331
Tumor
0.2
917
Tumor
0.2
112
Tumor
0.2
387
Tumor
0.2
355
Tumor
0.2
443
Tumor
0.2
517
Tumor
0.2
537
Tumor
0.2
963
Tumor
0.2
715
Tumor
0.2
823
Tumor
0.2
1043
Tumor
0.2
1031
Tumor
0.2
363
Tumor
0.2
573
Tumor
0.2
423
Tumor
0.2
535
Tumor
0.2
724
Normal
0.2
883
Tumor
0.2
873
Tumor
0.2
685
Tumor
0.2
1021
Tumor
0.2
777
Tumor
0.2
957
Tumor
0.1
213
Tumor
0.1
257
Tumor
0.1
211
Tumor
0.1
983
Tumor
0.1
921
Tumor
0.1
461
Tumor
0.1
665
Tumor
0.1
861
Tumor
0.1
125
Tumor
0.1
1027
Tumor
0.1
145
Tumor
0.1
814
Normal
0.1
647
Tumor
0.1
721
Tumor
0.1
493
Tumor
0.1
741
Tumor
0.1
571
Tumor
0.1
361
Tumor
0.1
498
Normal
0.0
187
Tumor
0.0
491
Tumor
0.0
353
Tumor
0.0
965
Tumor
0.0
313
Tumor
0.0
513
Tumor
0.0
515
Tumor
0.0
911
Tumor
0.0
964
Normal
0.0
455
Tumor
0.0
426
Normal
0.0
137
Tumor
0.0
478
Normal
0.0
297
Tumor
0.0
954
Normal
0.0
567
Tumor
0.0
1015
Tumor
0.0
481
Tumor
0.0
356
Normal
0.0
557
Tumor
0.0
224
Normal
0.0
393
Tumor
0.0
185
Tumor
0.0
147
Tumor
0.0
742
Normal
0.0
342
Normal
0.0
383
Tumor
0.0
966
Normal
0.0
488
Normal
0.0
744
Normal
0.0
365
Tumor
0.0
466
Normal
0.0
142
Normal
0.0
428
Normal
-0.1
545
Tumor
-0.1
536
Normal
-0.1
284
Normal
-0.1
984
Normal
-0.1
867
Tumor
-0.1
563
Tumor
-0.1
866
Normal
-0.1
524
Normal
-0.1
976
Normal
-0.1
435
Tumor
-0.1
862
Normal
-0.1
923
Tumor
-0.1
311
Tumor
-0.1
922
Normal
-0.1
126
Normal
-0.1
755
Tumor
-0.1
1025
Tumor
-0.1
328
Normal
-0.1
955
Tumor
-0.1
468
Normal
-0.1
487
Tumor
-0.1
492
Normal
-0.1
286
Normal
-0.1
341
Tumor
-0.1
616
Normal
-0.1
858
Normal
-0.1
664
Normal
-0.1
352
Normal
-0.1
723
Tumor
-0.1
161
Tumor
-0.1
278
Normal
-0.1
196
Normal
-0.1
868
Normal
-0.1
375
Tumor
-0.1
874
Normal
-0.1
978
Normal
-0.1
912
Normal
-0.1
926
Normal
-0.1
414
Normal
-0.1
864
Normal
-0.1
451
Tumor
-0.1
298
Normal
-0.1
738
Normal
-0.1
395
Tumor
-0.1
191
Tumor
-0.1
192
Normal
-0.1
484
Normal
-0.1
447
Tumor
-0.1
261
Tumor
-0.1
1041
Tumor
-0.1
416
Normal
-0.1
615
Tumor
-0.1
686
Normal
-0.1
424
Normal
-0.1
228
Normal
-0.1
146
Normal
-0.1
444
Normal
-0.1
344
Normal
-0.1
916
Normal
-0.1
672
Normal
-0.1
944
Normal
-0.1
824
Normal
-0.1
857
Tumor
-0.1
258
Normal
-0.1
358
Normal
-0.1
434
Normal
-0.1
128
Normal
-0.1
698
Normal
-0.1
456
Normal
-0.1
918
Normal
-0.1
462
Normal
-0.1
1026
Normal
-0.1
518
Normal
-0.1
635
Tumor
-0.1
364
Normal
-0.1
538
Normal
-0.1
482
Normal
-0.1
516
Normal
-0.1
384
Normal
-0.1
262
Normal
-0.1
483
Tumor
-0.1
1014
Normal
-0.1
526
Normal
-0.1
666
Normal
-0.1
452
Normal
-0.1
696
Normal
-0.1
938
Normal
-0.1
218
Normal
-0.1
212
Normal
-0.1
958
Normal
-0.1
222
Normal
-0.1
514
Normal
-0.2
494
Normal
-0.2
354
Normal
-0.2
816
Normal
-0.2
914
Normal
-0.2
474
Normal
-0.2
968
Normal
-0.2
132
Normal
-0.2
1042
Normal
-0.2
464
Normal
-0.2
214
Normal
-0.2
878
Normal
-0.2
628
Normal
-0.2
785
Tumor
-0.2
412
Normal
-0.2
195
Tumor
-0.2
546
Normal
-0.2
913
Tumor
-0.2
231
Tumor
-0.2
952
Normal
-0.2
114
Normal
-0.2
136
Normal
-0.2
472
Normal
-0.2
554
Normal
-0.2
662
Normal
-0.2
818
Normal
-0.2
138
Normal
-0.2
111
Normal
-0.2
422
Normal
-0.2
636
Normal
-0.2
648
Normal
-0.2
778
Normal
-0.2
982
Normal
-0.2
272
Normal
-0.2
448
Normal
-0.2
391
Tumor
-0.2
882
Normal
-0.2
124
Normal
-0.2
956
Normal
-0.2
1046
Normal
-0.2
1032
Normal
-0.2
617
Tumor
-0.2
332
Normal
-0.2
1028
Normal
-0.2
368
Normal
-0.2
924
Normal
-0.2
127
Tumor
-0.2
525
Tumor
-0.2
446
Normal
-0.2
1013
Tumor
-0.2
714
Normal
-0.2
727
Tumor
-0.2
528
Normal
-0.2
746
Normal
-0.2
232
Normal
-0.2
314
Normal
-0.2
1022
Normal
-0.2
534
Normal
-0.2
728
Normal
-0.2
268
Normal
-0.2
618
Normal
-0.2
312
Normal
-0.2
568
Normal
-0.2
366
Normal
-0.2
852
Normal
-0.2
1016
Normal
-0.2
376
Normal
-0.2
716
Normal
-0.2
786
Normal
-0.2
392
Normal
-0.2
884
Normal
-0.3
113
Tumor
-0.3
421
Tumor
-0.3
362
Normal
-0.3
722
Normal
-0.3
574
Normal
-0.3
465
Tumor
-0.3
162
Normal
-0.3
642
Normal
-0.3
386
Normal
-0.3
558
Normal
-0.3
188
Normal
-0.3
394
Normal
-0.3
564
Normal
-0.3
1044
Normal
-0.3
327
Tumor
-0.3
925
Tumor
-0.3
172
Normal
-0.3
123
Tumor
-0.3
415
Tumor
-0.3
1045
Tumor
-0.3
148
Normal
-0.3
572
Normal
-0.3
756
Normal
-0.3
981
Tumor
-0.3
432
Normal
-0.3
396
Normal
-0.3
388
Normal
-0.4
436
Normal
-0.4
186
Normal
-0.4
915
Tumor
-0.4
627
Tumor
-0.5
745
Tumor
-0.5
477
Tumor
-0.6
171
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
