MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:32.3 nTPM
GTEx:9.5 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:53.3 nTPM
Mouse:6.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.5
2586 Male, age 75, left hemisphere 25.7
1827 Male, age 72, unknown 22.0
1870 Female, age 42, unknown 21.7
2411 Female, age 72, unknown 19.9
2666 Male, age 74, left hemisphere 18.5
1830 Male, age 51, unknown 17.7
2828 Female, age 72, unknown 17.2
1833 Male, age 53, unknown 14.6
2019 Male, age 18, unknown 14.4
2219 Male, age 76, both hemispheres 13.0
Dorsal raphe nucleus
nTPM: 24.9
2047 Male, age 72, unknown 32.3
2016 Female, age 72, unknown 28.2
2298 Female, age 72, unknown 24.3
2750 Male, age 76, both hemispheres 22.1
1828 Male, age 53, unknown 17.5
Inferior colliculus
nTPM: 20.8
2849 Male, age 72, unknown 26.3
1890 Male, age 53, unknown 22.0
1848 Female, age 42, unknown 18.8
2097 Female, age 72, unknown 16.4
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Periaquaductal grey, anterior
nTPM: 27.2
2502 Female, age 75, unknown 28.6
1947 Male, age 18, unknown 27.1
1795 Male, age 51, unknown 26.1
Periaquaductal grey, dorsal
nTPM: 28.9
2850 Male, age 76, both hemispheres 37.8
1840 Male, age 53, unknown 33.8
2464 Female, age 72, unknown 23.8
1831 Male, age 72, unknown 20.2
Periaquaductal grey, lateral
nTPM: 32.3
2272 Male, age 74, both hemispheres 47.1
2140 Male, age 76, both hemispheres 27.2
2053 Male, age 18, unknown 22.8
Pretectal area
nTPM: 16.8
2825 Male, age 18, unknown 29.4
2224 Female, age 72, unknown 28.4
2273 Male, age 74, both hemispheres 25.6
2407 Male, age 75, both hemispheres 16.7
2316 Male, age 76, right hemisphere 16.4
1817 Female, age 42, unknown 13.9
1944 Female, age 72, unknown 12.4
1816 Male, age 51, unknown 11.8
2007 Male, age 72, unknown 11.7
1815 Male, age 53, unknown 10.0
2667 Female, age 75, unknown 7.9
Red nucleus
nTPM: 17.3
2584 Male, age 75, left hemisphere 31.9
2823 Male, age 76, right hemisphere 22.6
2227 Male, age 72, unknown 20.3
2769 Male, age 72, unknown 20.0
2725 Female, age 75, unknown 16.8
1865 Male, age 51, unknown 15.1
2588 Male, age 74, left hemisphere 14.6
1904 Male, age 53, unknown 14.2
1954 Female, age 42, unknown 14.2
2785 Male, age 18, unknown 13.1
2503 Female, age 72, unknown 12.7
1821 Female, age 72, unknown 11.5
Substantia nigra
nTPM: 15.3
1941 Male, age 53, unknown 25.9
2590 Female, age 75, unknown 23.6
1851 Male, age 51, unknown 16.9
2699 Male, age 18, unknown 15.7
2583 Male, age 75, right hemisphere 15.0
1916 Female, age 42, unknown 14.7
2665 Male, age 74, both hemispheres 14.0
1889 Female, age 72, unknown 11.8
2241 Male, age 72, unknown 9.0
2409 Female, age 72, unknown 6.1
Superior colliculus
nTPM: 17.8
2587 Male, age 74, left hemisphere 25.7
1839 Male, age 51, unknown 20.2
2668 Female, age 75, unknown 19.0
2664 Male, age 75, both hemispheres 18.6
2261 Male, age 18, unknown 18.0
1796 Male, age 53, unknown 17.6
1895 Male, age 76, right hemisphere 16.8
1995 Male, age 72, unknown 16.2
2087 Female, age 72, unknown 13.4
1913 Female, age 42, unknown 12.3
Ventral tegmental area
nTPM: 20.7
2021 Male, age 53, unknown 25.8
2223 Female, age 72, unknown 25.4
1915 Female, age 42, unknown 22.4
1942 Male, age 51, unknown 22.3
2410 Female, age 72, unknown 14.2
2218 Male, age 76, both hemispheres 13.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 25.3
Min nTPM: 1.6
Std nTPM: 4.2
Median nTPM: 9.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 22.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 20.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 19.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 18.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 16.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 16.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.6
FF:10158-103A5 76 years, female 41.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 53.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 65.9
Min nTPM: 16.5
Sample A Female 26.9
Sample B Female 65.9
Sample C Male 16.5
Sample D Male 28.1
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 26.9
Min nTPM: 17.2
Sample A Female 26.9
Sample B Female 17.2
Sample C Male 22.4
Sample D Male 18.1
Periaqueductal gray
nTPM: 12.6
Samples: 3

Max nTPM: 13.4
Min nTPM: 11.6
Sample B Female 12.8
Sample C Male 13.4
Sample D Male 11.6
Superior colliculi
nTPM: 53.3
Samples: 4

Max nTPM: 110.8
Min nTPM: 20.8
Sample A Female 55.2
Sample B Female 110.8
Sample C Male 20.8
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.7
Sample A Male 8.5
Sample B Male 6.2
Sample C Female 5.7
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
76085748 Antisense, RP_060620_02_A08, Mouse strain C57BL/6J (56 days, male) 1.9
69736316 Antisense, RP_050503_04_E08, Mouse strain C57BL/6J (56 days, male) 0.7

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