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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGAP4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGAP4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
93.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
72.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
66.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
59.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
55.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
53.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
46.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
41.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
35.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
30.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.5
393
Tumor
1.4
923
Tumor
1.4
813
Tumor
1.4
331
Tumor
1.1
661
Tumor
1.1
311
Tumor
1.1
814
Normal
1.1
1013
Tumor
1.0
857
Tumor
0.9
536
Normal
0.9
421
Tumor
0.8
697
Tumor
0.8
283
Tumor
0.8
553
Tumor
0.8
727
Tumor
0.8
467
Tumor
0.8
883
Tumor
0.8
434
Normal
0.8
983
Tumor
0.8
211
Tumor
0.7
951
Tumor
0.7
525
Tumor
0.7
261
Tumor
0.7
385
Tumor
0.7
391
Tumor
0.7
851
Tumor
0.7
535
Tumor
0.6
195
Tumor
0.6
217
Tumor
0.6
917
Tumor
0.6
313
Tumor
0.6
545
Tumor
0.6
663
Tumor
0.6
137
Tumor
0.6
524
Normal
0.6
943
Tumor
0.6
361
Tumor
0.5
571
Tumor
0.5
966
Normal
0.5
491
Tumor
0.5
262
Normal
0.5
213
Tumor
0.5
724
Normal
0.5
492
Normal
0.5
478
Normal
0.5
126
Normal
0.5
978
Normal
0.5
367
Tumor
0.4
268
Normal
0.4
713
Tumor
0.4
538
Normal
0.4
817
Tumor
0.4
355
Tumor
0.4
224
Normal
0.4
192
Normal
0.4
185
Tumor
0.4
1044
Normal
0.4
188
Normal
0.4
498
Normal
0.4
1025
Tumor
0.4
662
Normal
0.4
141
Tumor
0.4
455
Tumor
0.3
125
Tumor
0.3
721
Tumor
0.3
444
Normal
0.3
395
Tumor
0.3
1015
Tumor
0.3
447
Tumor
0.3
861
Tumor
0.3
921
Tumor
0.3
672
Normal
0.3
383
Tumor
0.3
852
Normal
0.3
911
Tumor
0.3
191
Tumor
0.3
671
Tumor
0.3
396
Normal
0.3
468
Normal
0.3
573
Tumor
0.3
284
Normal
0.3
375
Tumor
0.2
666
Normal
0.2
815
Tumor
0.2
384
Normal
0.2
916
Normal
0.2
272
Normal
0.2
686
Normal
0.2
297
Tumor
0.2
142
Normal
0.2
386
Normal
0.2
344
Normal
0.2
716
Normal
0.2
823
Tumor
0.2
124
Normal
0.2
146
Normal
0.2
685
Tumor
0.2
362
Normal
0.2
227
Tumor
0.2
138
Normal
0.2
312
Normal
0.2
952
Normal
0.2
451
Tumor
0.2
218
Normal
0.2
914
Normal
0.2
366
Normal
0.2
1042
Normal
0.2
778
Normal
0.2
954
Normal
0.2
574
Normal
0.2
332
Normal
0.2
112
Tumor
0.2
352
Normal
0.1
223
Tumor
0.1
976
Normal
0.1
967
Tumor
0.1
628
Normal
0.1
956
Normal
0.1
258
Normal
0.1
963
Tumor
0.1
212
Normal
0.1
1031
Tumor
0.1
231
Tumor
0.1
695
Tumor
0.1
874
Normal
0.1
135
Tumor
0.1
1028
Normal
0.1
816
Normal
0.1
557
Tumor
0.1
368
Normal
0.1
858
Normal
0.1
387
Tumor
0.1
461
Tumor
0.1
641
Tumor
0.1
328
Normal
0.1
136
Normal
0.1
518
Normal
0.1
558
Normal
0.1
563
Tumor
0.0
877
Tumor
0.0
926
Normal
0.0
665
Tumor
0.0
494
Normal
0.0
664
Normal
0.0
392
Normal
0.0
975
Tumor
0.0
145
Tumor
0.0
984
Normal
0.0
938
Normal
0.0
786
Normal
0.0
456
Normal
0.0
884
Normal
0.0
862
Normal
0.0
286
Normal
0.0
232
Normal
0.0
514
Normal
0.0
187
Tumor
0.0
868
Normal
0.0
528
Normal
0.0
918
Normal
0.0
364
Normal
0.0
958
Normal
0.0
516
Normal
0.0
537
Tumor
0.0
432
Normal
0.0
867
Tumor
0.0
953
Tumor
0.0
714
Normal
0.0
564
Normal
0.0
214
Normal
0.0
728
Normal
0.0
866
Normal
0.0
1026
Normal
0.0
358
Normal
0.0
474
Normal
-0.1
111
Normal
-0.1
488
Normal
-0.1
922
Normal
-0.1
1043
Tumor
-0.1
913
Tumor
-0.1
526
Normal
-0.1
172
Normal
-0.1
471
Tumor
-0.1
818
Normal
-0.1
424
Normal
-0.1
196
Normal
-0.1
388
Normal
-0.1
466
Normal
-0.1
944
Normal
-0.1
477
Tumor
-0.1
968
Normal
-0.1
452
Normal
-0.1
464
Normal
-0.1
114
Normal
-0.1
756
Normal
-0.1
696
Normal
-0.1
278
Normal
-0.1
394
Normal
-0.1
1016
Normal
-0.1
422
Normal
-0.1
1046
Normal
-0.1
738
Normal
-0.1
925
Tumor
-0.1
354
Normal
-0.1
493
Tumor
-0.1
228
Normal
-0.1
864
Normal
-0.1
955
Tumor
-0.1
744
Normal
-0.1
413
Tumor
-0.1
881
Tumor
-0.1
882
Normal
-0.1
415
Tumor
-0.1
472
Normal
-0.1
698
Normal
-0.1
722
Normal
-0.1
568
Normal
-0.1
435
Tumor
-0.1
554
Normal
-0.2
824
Normal
-0.2
376
Normal
-0.2
546
Normal
-0.2
128
Normal
-0.2
132
Normal
-0.2
365
Tumor
-0.2
964
Normal
-0.2
723
Tumor
-0.2
648
Normal
-0.2
636
Normal
-0.2
617
Tumor
-0.2
1014
Normal
-0.2
742
Normal
-0.2
222
Normal
-0.2
428
Normal
-0.2
616
Normal
-0.2
448
Normal
-0.2
433
Tumor
-0.2
1022
Normal
-0.2
416
Normal
-0.2
912
Normal
-0.2
356
Normal
-0.2
1021
Tumor
-0.2
446
Normal
-0.2
1032
Normal
-0.2
342
Normal
-0.2
642
Normal
-0.2
162
Normal
-0.2
113
Tumor
-0.2
298
Normal
-0.2
567
Tumor
-0.2
412
Normal
-0.3
924
Normal
-0.3
572
Normal
-0.3
482
Normal
-0.3
1045
Tumor
-0.3
285
Tumor
-0.3
715
Tumor
-0.3
878
Normal
-0.3
462
Normal
-0.3
314
Normal
-0.3
161
Tumor
-0.3
982
Normal
-0.3
341
Tumor
-0.3
414
Normal
-0.3
863
Tumor
-0.3
148
Normal
-0.3
487
Tumor
-0.3
534
Normal
-0.3
463
Tumor
-0.4
426
Normal
-0.4
737
Tumor
-0.4
618
Normal
-0.4
1027
Tumor
-0.4
746
Normal
-0.4
427
Tumor
-0.4
257
Tumor
-0.4
186
Normal
-0.4
483
Tumor
-0.4
481
Tumor
-0.4
465
Tumor
-0.4
627
Tumor
-0.4
353
Tumor
-0.5
785
Tumor
-0.5
743
Tumor
-0.5
267
Tumor
-0.5
436
Normal
-0.5
271
Tumor
-0.5
635
Tumor
-0.5
363
Tumor
-0.5
873
Tumor
-0.5
865
Tumor
-0.5
484
Normal
-0.5
443
Tumor
-0.5
221
Tumor
-0.5
277
Tumor
-0.5
915
Tumor
-0.6
127
Tumor
-0.6
517
Tumor
-0.6
423
Tumor
-0.6
937
Tumor
-0.6
327
Tumor
-0.6
755
Tumor
-0.6
357
Tumor
-0.6
351
Tumor
-0.7
957
Tumor
-0.7
515
Tumor
-0.7
615
Tumor
-0.7
977
Tumor
-0.8
473
Tumor
-0.8
513
Tumor
-0.8
131
Tumor
-0.8
497
Tumor
-0.8
147
Tumor
-0.8
533
Tumor
-0.9
527
Tumor
-0.9
431
Tumor
-0.9
523
Tumor
-0.9
411
Tumor
-0.9
171
Tumor
-0.9
1041
Tumor
-0.9
425
Tumor
-0.9
777
Tumor
-1.0
965
Tumor
-1.0
741
Tumor
-1.0
981
Tumor
-1.0
647
Tumor
-1.0
445
Tumor
-1.0
745
Tumor
-1.0
123
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
