We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM230 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
94.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
236.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
231.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
200.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
186.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
186.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
184.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
175.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
172.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
170.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
170.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
169.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
168.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
167.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
167.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
165.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
165.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
164.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
163.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
162.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
161.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
159.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
159.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
157.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
155.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
154.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
153.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
153.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
153.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
153.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
152.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
152.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
151.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
149.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
148.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
147.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
144.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
144.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
144.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
142.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
140.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
138.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
136.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
136.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
136.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
135.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
135.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
135.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
135.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
134.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
133.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
133.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
132.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
132.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
132.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
132.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
131.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
130.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
130.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
130.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
130.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
129.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
129.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
129.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
128.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
128.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
128.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
126.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
126.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
125.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
125.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
124.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
123.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
123.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
121.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
121.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
121.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
120.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
120.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
120.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
120.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
119.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
119.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
118.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
118.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
118.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
118.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
118.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
118.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
117.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
117.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
117.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
116.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
115.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
115.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
115.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
115.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
115.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
115.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
114.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
114.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
114.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
113.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
112.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
112.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
111.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
111.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
111.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
110.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
110.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
110.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
110.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
110.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
109.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
109.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
109.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
109.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
108.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
108.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
108.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
107.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
107.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
107.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
107.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
105.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
105.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
104.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
104.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
104.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
104.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
104.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
104.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
103.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
103.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
103.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
102.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
102.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
100.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
100.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
100.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
100.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
99.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
99.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
99.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
99.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
98.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
97.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
97.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
97.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
97.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
97.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
97.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
96.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
96.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
95.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
95.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
95.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
94.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
94.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
94.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
94.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
94.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
94.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
93.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
92.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
92.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
92.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
92.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
92.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
92.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
92.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
92.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
92.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
91.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
91.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
91.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
91.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
90.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
90.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
90.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
90.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
90.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
89.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
89.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
89.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
89.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
89.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
88.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
88.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
88.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
88.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
87.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
87.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
87.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
87.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
86.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
86.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
86.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
86.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
86.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
86.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
86.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
85.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
85.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
85.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
85.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
85.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
84.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
84.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
82.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
82.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
82.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
81.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
81.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
81.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
81.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
81.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
81.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
80.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
80.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
80.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
79.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
79.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
79.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
79.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
79.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
79.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
78.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
78.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
77.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
76.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
76.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
76.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
75.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
75.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
75.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
75.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
75.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
75.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
74.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
74.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
74.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
73.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
73.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
73.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
73.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
73.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
72.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
72.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
72.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
72.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
72.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
72.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
72.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
72.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
71.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
71.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
71.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
71.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
70.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
70.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
70.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
70.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
70.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
70.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
68.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
68.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
67.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
67.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
67.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
67.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
67.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
67.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
66.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
65.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
65.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
64.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
64.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
64.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
63.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
62.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
62.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
61.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
60.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
59.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
58.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
58.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
58.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
58.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
57.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
56.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
56.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
56.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
56.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
55.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
55.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
55.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
51.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
50.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
49.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
48.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
47.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
47.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
45.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
44.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
44.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
43.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
43.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
42.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
41.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
41.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
41.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
36.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
19.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.4
171
Tumor
1.1
231
Tumor
1.1
477
Tumor
1.0
567
Tumor
0.9
483
Tumor
0.9
967
Tumor
0.9
123
Tumor
0.9
685
Tumor
0.9
455
Tumor
0.8
411
Tumor
0.8
977
Tumor
0.8
963
Tumor
0.8
421
Tumor
0.8
965
Tumor
0.8
1027
Tumor
0.8
671
Tumor
0.8
525
Tumor
0.7
261
Tumor
0.7
481
Tumor
0.7
857
Tumor
0.7
553
Tumor
0.7
697
Tumor
0.6
955
Tumor
0.6
745
Tumor
0.6
615
Tumor
0.6
431
Tumor
0.6
1015
Tumor
0.6
1021
Tumor
0.6
351
Tumor
0.6
493
Tumor
0.5
357
Tumor
0.5
112
Tumor
0.5
665
Tumor
0.5
147
Tumor
0.5
1041
Tumor
0.5
695
Tumor
0.5
883
Tumor
0.5
267
Tumor
0.5
571
Tumor
0.5
915
Tumor
0.5
515
Tumor
0.5
911
Tumor
0.5
451
Tumor
0.4
127
Tumor
0.4
557
Tumor
0.4
533
Tumor
0.4
427
Tumor
0.4
497
Tumor
0.4
343
Tumor
0.3
537
Tumor
0.3
715
Tumor
0.3
415
Tumor
0.3
135
Tumor
0.3
873
Tumor
0.3
1013
Tumor
0.3
433
Tumor
0.3
913
Tumor
0.3
257
Tumor
0.3
663
Tumor
0.3
185
Tumor
0.3
981
Tumor
0.3
514
Normal
0.3
517
Tumor
0.3
636
Normal
0.3
648
Normal
0.3
494
Normal
0.2
313
Tumor
0.2
921
Tumor
0.2
647
Tumor
0.2
563
Tumor
0.2
361
Tumor
0.2
471
Tumor
0.2
1028
Normal
0.2
527
Tumor
0.2
867
Tumor
0.2
435
Tumor
0.2
395
Tumor
0.2
877
Tumor
0.2
741
Tumor
0.2
727
Tumor
0.2
953
Tumor
0.2
484
Normal
0.2
128
Normal
0.2
535
Tumor
0.1
1045
Tumor
0.1
232
Normal
0.1
861
Tumor
0.1
474
Normal
0.1
523
Tumor
0.1
142
Normal
0.1
524
Normal
0.1
487
Tumor
0.1
572
Normal
0.1
331
Tumor
0.1
813
Tumor
0.1
211
Tumor
0.1
1032
Normal
0.1
284
Normal
0.1
951
Tumor
0.1
172
Normal
0.1
162
Normal
0.1
355
Tumor
0.1
866
Normal
0.1
278
Normal
0.1
452
Normal
0.1
492
Normal
0.1
1043
Tumor
0.1
528
Normal
0.0
714
Normal
0.0
465
Tumor
0.0
554
Normal
0.0
628
Normal
0.0
922
Normal
0.0
882
Normal
0.0
868
Normal
0.0
964
Normal
0.0
983
Tumor
0.0
546
Normal
0.0
864
Normal
0.0
958
Normal
0.0
425
Tumor
0.0
686
Normal
0.0
534
Normal
0.0
482
Normal
0.0
976
Normal
0.0
881
Tumor
0.0
1031
Tumor
0.0
214
Normal
0.0
196
Normal
0.0
863
Tumor
0.0
513
Tumor
0.0
538
Normal
0.0
466
Normal
0.0
462
Normal
0.0
925
Tumor
0.0
328
Normal
0.0
222
Normal
0.0
195
Tumor
0.0
488
Normal
0.0
217
Tumor
0.0
383
Tumor
0.0
558
Normal
0.0
912
Normal
0.0
815
Tumor
0.0
662
Normal
0.0
1022
Normal
0.0
191
Tumor
0.0
446
Normal
-0.1
884
Normal
-0.1
412
Normal
-0.1
478
Normal
-0.1
536
Normal
-0.1
914
Normal
-0.1
384
Normal
-0.1
1046
Normal
-0.1
518
Normal
-0.1
698
Normal
-0.1
132
Normal
-0.1
148
Normal
-0.1
1044
Normal
-0.1
192
Normal
-0.1
937
Tumor
-0.1
213
Tumor
-0.1
944
Normal
-0.1
368
Normal
-0.1
728
Normal
-0.1
468
Normal
-0.1
952
Normal
-0.1
545
Tumor
-0.1
918
Normal
-0.1
724
Normal
-0.1
114
Normal
-0.1
696
Normal
-0.1
526
Normal
-0.1
262
Normal
-0.1
113
Tumor
-0.1
878
Normal
-0.1
388
Normal
-0.1
396
Normal
-0.1
364
Normal
-0.1
722
Normal
-0.1
957
Tumor
-0.1
473
Tumor
-0.1
391
Tumor
-0.1
443
Tumor
-0.1
461
Tumor
-0.1
858
Normal
-0.2
327
Tumor
-0.2
161
Tumor
-0.2
277
Tumor
-0.2
212
Normal
-0.2
968
Normal
-0.2
283
Tumor
-0.2
564
Normal
-0.2
297
Tumor
-0.2
777
Tumor
-0.2
746
Normal
-0.2
456
Normal
-0.2
312
Normal
-0.2
664
Normal
-0.2
125
Tumor
-0.2
145
Tumor
-0.2
422
Normal
-0.2
472
Normal
-0.2
666
Normal
-0.2
491
Tumor
-0.2
365
Tumor
-0.2
516
Normal
-0.2
187
Tumor
-0.2
344
Normal
-0.2
975
Tumor
-0.2
824
Normal
-0.2
131
Tumor
-0.2
342
Normal
-0.2
618
Normal
-0.2
814
Normal
-0.2
218
Normal
-0.2
268
Normal
-0.2
786
Normal
-0.2
738
Normal
-0.2
444
Normal
-0.2
358
Normal
-0.2
862
Normal
-0.2
464
Normal
-0.2
938
Normal
-0.2
354
Normal
-0.2
376
Normal
-0.2
258
Normal
-0.2
966
Normal
-0.2
136
Normal
-0.2
627
Tumor
-0.2
672
Normal
-0.2
744
Normal
-0.2
426
Normal
-0.2
141
Tumor
-0.2
661
Tumor
-0.2
124
Normal
-0.2
982
Normal
-0.2
392
Normal
-0.3
314
Normal
-0.3
778
Normal
-0.3
924
Normal
-0.3
641
Tumor
-0.3
916
Normal
-0.3
852
Normal
-0.3
362
Normal
-0.3
221
Tumor
-0.3
137
Tumor
-0.3
756
Normal
-0.3
642
Normal
-0.3
716
Normal
-0.3
713
Tumor
-0.3
436
Normal
-0.3
823
Tumor
-0.3
188
Normal
-0.3
356
Normal
-0.3
816
Normal
-0.3
386
Normal
-0.3
926
Normal
-0.3
186
Normal
-0.3
943
Tumor
-0.3
874
Normal
-0.3
956
Normal
-0.3
463
Tumor
-0.3
721
Tumor
-0.3
416
Normal
-0.3
1026
Normal
-0.3
367
Tumor
-0.3
467
Tumor
-0.3
1016
Normal
-0.3
818
Normal
-0.3
785
Tumor
-0.3
271
Tumor
-0.3
138
Normal
-0.3
954
Normal
-0.3
742
Normal
-0.3
616
Normal
-0.3
352
Normal
-0.3
393
Tumor
-0.3
448
Normal
-0.4
224
Normal
-0.4
865
Tumor
-0.4
568
Normal
-0.4
851
Tumor
-0.4
332
Normal
-0.4
366
Normal
-0.4
375
Tumor
-0.4
228
Normal
-0.4
1042
Normal
-0.4
755
Tumor
-0.4
498
Normal
-0.4
635
Tumor
-0.4
423
Tumor
-0.4
272
Normal
-0.4
353
Tumor
-0.4
298
Normal
-0.4
286
Normal
-0.4
126
Normal
-0.4
984
Normal
-0.4
923
Tumor
-0.4
1014
Normal
-0.4
111
Normal
-0.4
447
Tumor
-0.5
414
Normal
-0.5
146
Normal
-0.5
311
Tumor
-0.5
617
Tumor
-0.5
737
Tumor
-0.5
574
Normal
-0.5
817
Tumor
-0.5
394
Normal
-0.5
917
Tumor
-0.5
428
Normal
-0.5
424
Normal
-0.5
385
Tumor
-0.5
387
Tumor
-0.6
341
Tumor
-0.6
434
Normal
-0.6
978
Normal
-0.6
363
Tumor
-0.6
413
Tumor
-0.7
432
Normal
-0.7
723
Tumor
-0.7
573
Tumor
-0.7
1025
Tumor
-0.7
227
Tumor
-0.8
223
Tumor
-0.8
743
Tumor
-0.8
285
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.