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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
47.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
37.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
34.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
26.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.7
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
168.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
135.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
100.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
80.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
77.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
76.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
73.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
72.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
67.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
65.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
64.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
64.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
61.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
61.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
60.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
60.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
60.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
59.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
57.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
57.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
56.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
54.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
53.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
53.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
51.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
50.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
50.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
49.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
48.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
47.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
46.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
46.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
45.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
44.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
43.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
43.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
43.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
42.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
42.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
41.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
40.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
39.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
38.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
36.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
35.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
35.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
34.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
32.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
31.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
30.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
30.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
30.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
29.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
24.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
0.5
525
Tumor
0.5
1014
Normal
0.5
261
Tumor
0.5
953
Tumor
0.4
951
Tumor
0.4
745
Tumor
0.4
538
Normal
0.4
147
Tumor
0.4
778
Normal
0.4
744
Normal
0.4
922
Normal
0.4
537
Tumor
0.4
984
Normal
0.4
1027
Tumor
0.4
554
Normal
0.3
411
Tumor
0.3
957
Tumor
0.3
1046
Normal
0.3
746
Normal
0.3
435
Tumor
0.3
824
Normal
0.3
1026
Normal
0.3
944
Normal
0.3
313
Tumor
0.3
518
Normal
0.3
686
Normal
0.3
938
Normal
0.3
926
Normal
0.3
878
Normal
0.3
546
Normal
0.3
952
Normal
0.3
866
Normal
0.3
918
Normal
0.3
756
Normal
0.3
1016
Normal
0.3
696
Normal
0.3
714
Normal
0.3
954
Normal
0.3
484
Normal
0.3
738
Normal
0.3
286
Normal
0.2
123
Tumor
0.2
882
Normal
0.2
723
Tumor
0.2
884
Normal
0.2
1028
Normal
0.2
615
Tumor
0.2
816
Normal
0.2
978
Normal
0.2
356
Normal
0.2
448
Normal
0.2
912
Normal
0.2
914
Normal
0.2
728
Normal
0.2
111
Normal
0.2
462
Normal
0.2
211
Tumor
0.2
142
Normal
0.2
124
Normal
0.2
968
Normal
0.2
488
Normal
0.2
412
Normal
0.2
517
Tumor
0.2
742
Normal
0.2
478
Normal
0.2
494
Normal
0.2
663
Tumor
0.2
916
Normal
0.2
716
Normal
0.2
698
Normal
0.2
1044
Normal
0.2
352
Normal
0.2
818
Normal
0.2
786
Normal
0.2
466
Normal
0.2
695
Tumor
0.2
298
Normal
0.2
128
Normal
0.2
955
Tumor
0.2
1022
Normal
0.2
526
Normal
0.2
113
Tumor
0.2
851
Tumor
0.2
1032
Normal
0.2
641
Tumor
0.2
472
Normal
0.2
284
Normal
0.2
224
Normal
0.2
864
Normal
0.2
212
Normal
0.2
616
Normal
0.2
536
Normal
0.2
715
Tumor
0.2
648
Normal
0.2
482
Normal
0.2
858
Normal
0.2
1045
Tumor
0.2
883
Tumor
0.2
524
Normal
0.1
474
Normal
0.1
964
Normal
0.1
534
Normal
0.1
852
Normal
0.1
364
Normal
0.1
344
Normal
0.1
514
Normal
0.1
528
Normal
0.1
911
Tumor
0.1
664
Normal
0.1
862
Normal
0.1
976
Normal
0.1
924
Normal
0.1
925
Tumor
0.1
314
Normal
0.1
471
Tumor
0.1
568
Normal
0.1
498
Normal
0.1
553
Tumor
0.1
572
Normal
0.1
392
Normal
0.1
1042
Normal
0.1
328
Normal
0.1
628
Normal
0.1
1021
Tumor
0.1
331
Tumor
0.1
132
Normal
0.1
431
Tumor
0.1
868
Normal
0.1
874
Normal
0.1
148
Normal
0.1
355
Tumor
0.1
285
Tumor
0.1
272
Normal
0.1
618
Normal
0.1
557
Tumor
0.1
114
Normal
0.1
492
Normal
0.1
434
Normal
0.1
481
Tumor
0.1
982
Normal
0.1
461
Tumor
0.1
376
Normal
0.1
567
Tumor
0.1
642
Normal
0.1
422
Normal
0.1
558
Normal
0.1
278
Normal
0.1
516
Normal
0.1
493
Tumor
0.1
416
Normal
0.1
136
Normal
0.1
956
Normal
0.1
672
Normal
0.1
341
Tumor
0.1
533
Tumor
0.1
977
Tumor
0.1
958
Normal
0.1
375
Tumor
0.1
465
Tumor
0.1
452
Normal
0.1
196
Normal
0.1
228
Normal
0.1
966
Normal
0.1
342
Normal
0.0
571
Tumor
0.0
861
Tumor
0.0
138
Normal
0.0
937
Tumor
0.0
396
Normal
0.0
426
Normal
0.0
456
Normal
0.0
981
Tumor
0.0
785
Tumor
0.0
627
Tumor
0.0
414
Normal
0.0
563
Tumor
0.0
662
Normal
0.0
467
Tumor
0.0
218
Normal
0.0
491
Tumor
0.0
817
Tumor
0.0
636
Normal
0.0
222
Normal
0.0
262
Normal
0.0
464
Normal
0.0
258
Normal
0.0
312
Normal
0.0
564
Normal
0.0
432
Normal
0.0
424
Normal
0.0
186
Normal
0.0
368
Normal
0.0
358
Normal
0.0
965
Tumor
0.0
666
Normal
0.0
617
Tumor
0.0
172
Normal
0.0
231
Tumor
0.0
267
Tumor
0.0
395
Tumor
0.0
415
Tumor
0.0
823
Tumor
0.0
913
Tumor
0.0
354
Normal
0.0
394
Normal
0.0
428
Normal
0.0
162
Normal
0.0
444
Normal
0.0
436
Normal
0.0
386
Normal
0.0
311
Tumor
0.0
126
Normal
0.0
363
Tumor
0.0
362
Normal
0.0
983
Tumor
0.0
421
Tumor
0.0
427
Tumor
0.0
413
Tumor
0.0
214
Normal
0.0
665
Tumor
0.0
192
Normal
0.0
815
Tumor
0.0
388
Normal
0.0
722
Normal
-0.1
446
Normal
-0.1
283
Tumor
-0.1
1041
Tumor
-0.1
232
Normal
-0.1
468
Normal
-0.1
187
Tumor
-0.1
366
Normal
-0.1
963
Tumor
-0.1
277
Tumor
-0.1
353
Tumor
-0.1
146
Normal
-0.1
191
Tumor
-0.1
332
Normal
-0.1
873
Tumor
-0.1
721
Tumor
-0.1
574
Normal
-0.1
523
Tumor
-0.1
365
Tumor
-0.1
327
Tumor
-0.1
195
Tumor
-0.1
141
Tumor
-0.1
1043
Tumor
-0.1
661
Tumor
-0.1
393
Tumor
-0.1
513
Tumor
-0.1
724
Normal
-0.1
384
Normal
-0.1
447
Tumor
-0.1
223
Tumor
-0.1
573
Tumor
-0.1
727
Tumor
-0.1
867
Tumor
-0.1
697
Tumor
-0.1
1015
Tumor
-0.1
477
Tumor
-0.1
268
Normal
-0.1
915
Tumor
-0.1
387
Tumor
-0.1
451
Tumor
-0.1
1031
Tumor
-0.1
433
Tumor
-0.1
647
Tumor
-0.1
213
Tumor
-0.1
188
Normal
-0.2
497
Tumor
-0.2
423
Tumor
-0.2
881
Tumor
-0.2
357
Tumor
-0.2
545
Tumor
-0.2
685
Tumor
-0.2
185
Tumor
-0.2
713
Tumor
-0.2
217
Tumor
-0.2
131
Tumor
-0.2
515
Tumor
-0.2
271
Tumor
-0.2
125
Tumor
-0.2
137
Tumor
-0.2
755
Tumor
-0.2
865
Tumor
-0.2
391
Tumor
-0.2
743
Tumor
-0.2
877
Tumor
-0.2
737
Tumor
-0.2
943
Tumor
-0.2
455
Tumor
-0.2
161
Tumor
-0.3
257
Tumor
-0.3
814
Normal
-0.3
535
Tumor
-0.3
145
Tumor
-0.3
297
Tumor
-0.3
917
Tumor
-0.3
921
Tumor
-0.3
975
Tumor
-0.3
857
Tumor
-0.3
671
Tumor
-0.3
351
Tumor
-0.3
443
Tumor
-0.3
127
Tumor
-0.4
221
Tumor
-0.4
385
Tumor
-0.4
777
Tumor
-0.4
367
Tumor
-0.4
135
Tumor
-0.4
343
Tumor
-0.4
383
Tumor
-0.4
741
Tumor
-0.4
473
Tumor
-0.4
112
Tumor
-0.4
487
Tumor
-0.4
967
Tumor
-0.4
227
Tumor
-0.4
463
Tumor
-0.5
425
Tumor
-0.5
483
Tumor
-0.5
361
Tumor
-0.5
813
Tumor
-0.5
527
Tumor
-0.5
923
Tumor
-0.5
863
Tumor
-0.6
171
Tumor
-0.7
445
Tumor
-0.8
1025
Tumor
-0.9
635
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
