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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAVS is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAVS is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.2
1041
Tumor
1.1
351
Tumor
1.0
937
Tumor
0.9
487
Tumor
0.8
227
Tumor
0.8
411
Tumor
0.7
267
Tumor
0.7
1045
Tumor
0.7
363
Tumor
0.6
695
Tumor
0.6
745
Tumor
0.6
171
Tumor
0.6
647
Tumor
0.6
537
Tumor
0.6
261
Tumor
0.6
671
Tumor
0.5
727
Tumor
0.5
785
Tumor
0.5
977
Tumor
0.5
517
Tumor
0.5
851
Tumor
0.5
911
Tumor
0.5
483
Tumor
0.5
635
Tumor
0.4
431
Tumor
0.4
815
Tumor
0.4
1027
Tumor
0.4
445
Tumor
0.4
665
Tumor
0.4
641
Tumor
0.4
455
Tumor
0.4
867
Tumor
0.4
627
Tumor
0.4
1013
Tumor
0.4
1015
Tumor
0.3
743
Tumor
0.3
477
Tumor
0.3
415
Tumor
0.3
423
Tumor
0.3
954
Normal
0.3
473
Tumor
0.3
123
Tumor
0.3
221
Tumor
0.3
861
Tumor
0.3
741
Tumor
0.3
965
Tumor
0.3
484
Normal
0.3
746
Normal
0.3
465
Tumor
0.3
648
Normal
0.3
915
Tumor
0.3
526
Normal
0.3
636
Normal
0.2
481
Tumor
0.2
864
Normal
0.2
436
Normal
0.2
883
Tumor
0.2
881
Tumor
0.2
642
Normal
0.2
913
Tumor
0.2
433
Tumor
0.2
944
Normal
0.2
513
Tumor
0.2
127
Tumor
0.2
514
Normal
0.2
686
Normal
0.2
231
Tumor
0.2
715
Tumor
0.2
217
Tumor
0.2
271
Tumor
0.2
1014
Normal
0.2
863
Tumor
0.2
938
Normal
0.2
868
Normal
0.2
557
Tumor
0.2
518
Normal
0.2
448
Normal
0.2
456
Normal
0.2
313
Tumor
0.2
426
Normal
0.2
1022
Normal
0.2
571
Tumor
0.2
1043
Tumor
0.2
672
Normal
0.2
446
Normal
0.2
396
Normal
0.2
567
Tumor
0.2
862
Normal
0.2
925
Tumor
0.2
873
Tumor
0.2
114
Normal
0.2
232
Normal
0.2
698
Normal
0.2
331
Tumor
0.2
666
Normal
0.2
257
Tumor
0.2
914
Normal
0.2
1028
Normal
0.2
786
Normal
0.2
714
Normal
0.1
523
Tumor
0.1
535
Tumor
0.1
412
Normal
0.1
393
Tumor
0.1
755
Tumor
0.1
111
Normal
0.1
468
Normal
0.1
878
Normal
0.1
616
Normal
0.1
554
Normal
0.1
462
Normal
0.1
1031
Tumor
0.1
568
Normal
0.1
818
Normal
0.1
444
Normal
0.1
866
Normal
0.1
921
Tumor
0.1
722
Normal
0.1
278
Normal
0.1
546
Normal
0.1
1032
Normal
0.1
471
Tumor
0.1
328
Normal
0.1
128
Normal
0.1
564
Normal
0.1
696
Normal
0.1
365
Tumor
0.1
824
Normal
0.1
135
Tumor
0.1
224
Normal
0.1
131
Tumor
0.1
432
Normal
0.1
963
Tumor
0.1
391
Tumor
0.1
572
Normal
0.1
852
Normal
0.1
534
Normal
0.1
877
Tumor
0.1
482
Normal
0.1
664
Normal
0.1
388
Normal
0.1
524
Normal
0.1
228
Normal
0.1
488
Normal
0.1
964
Normal
0.1
516
Normal
0.1
474
Normal
0.1
352
Normal
0.1
466
Normal
0.1
286
Normal
0.1
558
Normal
0.1
392
Normal
0.1
464
Normal
0.1
136
Normal
0.1
882
Normal
0.1
125
Tumor
0.1
716
Normal
0.1
778
Normal
0.1
285
Tumor
0.1
955
Tumor
0.1
951
Tumor
0.1
298
Normal
0.1
142
Normal
0.1
874
Normal
0.1
222
Normal
0.1
728
Normal
0.1
112
Tumor
0.1
984
Normal
0.1
376
Normal
0.1
615
Tumor
0.1
742
Normal
0.0
721
Tumor
0.0
952
Normal
0.0
327
Tumor
0.0
258
Normal
0.0
284
Normal
0.0
422
Normal
0.0
968
Normal
0.0
777
Tumor
0.0
472
Normal
0.0
744
Normal
0.0
816
Normal
0.0
394
Normal
0.0
494
Normal
0.0
387
Tumor
0.0
528
Normal
0.0
1021
Tumor
0.0
628
Normal
0.0
452
Normal
0.0
912
Normal
0.0
1046
Normal
0.0
1016
Normal
0.0
574
Normal
0.0
428
Normal
0.0
435
Tumor
0.0
414
Normal
0.0
368
Normal
0.0
138
Normal
0.0
924
Normal
0.0
451
Tumor
0.0
662
Normal
0.0
342
Normal
0.0
858
Normal
0.0
386
Normal
0.0
424
Normal
0.0
738
Normal
0.0
525
Tumor
0.0
355
Tumor
0.0
981
Tumor
0.0
982
Normal
0.0
124
Normal
0.0
553
Tumor
0.0
364
Normal
0.0
515
Tumor
0.0
214
Normal
0.0
147
Tumor
0.0
1026
Normal
0.0
148
Normal
0.0
367
Tumor
0.0
416
Normal
0.0
922
Normal
0.0
756
Normal
0.0
362
Normal
0.0
137
Tumor
0.0
618
Normal
-0.1
663
Tumor
-0.1
958
Normal
-0.1
1044
Normal
-0.1
425
Tumor
-0.1
723
Tumor
-0.1
356
Normal
-0.1
332
Normal
-0.1
498
Normal
-0.1
353
Tumor
-0.1
737
Tumor
-0.1
132
Normal
-0.1
297
Tumor
-0.1
713
Tumor
-0.1
361
Tumor
-0.1
1042
Normal
-0.1
126
Normal
-0.1
956
Normal
-0.1
145
Tumor
-0.1
384
Normal
-0.1
212
Normal
-0.1
344
Normal
-0.1
953
Tumor
-0.1
434
Normal
-0.1
161
Tumor
-0.1
357
Tumor
-0.1
492
Normal
-0.1
817
Tumor
-0.1
262
Normal
-0.1
926
Normal
-0.1
538
Normal
-0.1
461
Tumor
-0.1
141
Tumor
-0.1
478
Normal
-0.1
497
Tumor
-0.1
358
Normal
-0.1
314
Normal
-0.1
272
Normal
-0.1
354
Normal
-0.1
172
Normal
-0.1
617
Tumor
-0.1
573
Tumor
-0.1
1025
Tumor
-0.1
186
Normal
-0.1
975
Tumor
-0.1
447
Tumor
-0.1
918
Normal
-0.1
983
Tumor
-0.1
196
Normal
-0.1
268
Normal
-0.1
162
Normal
-0.1
312
Normal
-0.1
536
Normal
-0.1
366
Normal
-0.1
113
Tumor
-0.2
976
Normal
-0.2
195
Tumor
-0.2
218
Normal
-0.2
191
Tumor
-0.2
375
Tumor
-0.2
491
Tumor
-0.2
277
Tumor
-0.2
957
Tumor
-0.2
533
Tumor
-0.2
187
Tumor
-0.2
857
Tumor
-0.2
724
Normal
-0.2
916
Normal
-0.2
884
Normal
-0.2
685
Tumor
-0.2
421
Tumor
-0.2
493
Tumor
-0.2
563
Tumor
-0.2
943
Tumor
-0.2
966
Normal
-0.2
545
Tumor
-0.2
192
Normal
-0.2
413
Tumor
-0.3
146
Normal
-0.3
823
Tumor
-0.3
697
Tumor
-0.3
463
Tumor
-0.3
978
Normal
-0.3
188
Normal
-0.3
385
Tumor
-0.3
283
Tumor
-0.3
395
Tumor
-0.3
213
Tumor
-0.4
383
Tumor
-0.4
223
Tumor
-0.4
814
Normal
-0.4
427
Tumor
-0.4
467
Tumor
-0.4
443
Tumor
-0.4
813
Tumor
-0.4
185
Tumor
-0.5
865
Tumor
-0.5
341
Tumor
-0.6
661
Tumor
-0.6
343
Tumor
-0.6
923
Tumor
-0.6
211
Tumor
-0.7
311
Tumor
-0.7
917
Tumor
-0.8
527
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
