MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.2 nTPM
HPA Brain:49.0 nTPM
GTEx:16.2 nTPM
FANTOM5:60.2 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:46.9 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.9
2586 Male, age 75, left hemisphere 49.4
2411 Female, age 72, unknown 48.3
1830 Male, age 51, unknown 45.2
1870 Female, age 42, unknown 44.1
2828 Female, age 72, unknown 43.7
1833 Male, age 53, unknown 43.4
2019 Male, age 18, unknown 39.6
2666 Male, age 74, left hemisphere 39.5
1827 Male, age 72, unknown 39.2
2219 Male, age 76, both hemispheres 36.5
Dorsal raphe nucleus
nTPM: 44.4
2750 Male, age 76, both hemispheres 52.0
2047 Male, age 72, unknown 50.0
1828 Male, age 53, unknown 40.8
2298 Female, age 72, unknown 40.3
2016 Female, age 72, unknown 38.7
Inferior colliculus
nTPM: 35.1
1890 Male, age 53, unknown 37.0
1848 Female, age 42, unknown 36.5
2097 Female, age 72, unknown 34.2
2849 Male, age 72, unknown 32.8
Median raphe nucleus
nTPM: 49.0
2220 Male, age 76, midline 49.0
Periaquaductal grey, anterior
nTPM: 40.5
1947 Male, age 18, unknown 44.5
2502 Female, age 75, unknown 39.4
1795 Male, age 51, unknown 37.7
Periaquaductal grey, dorsal
nTPM: 36.9
2464 Female, age 72, unknown 39.5
1840 Male, age 53, unknown 37.9
1831 Male, age 72, unknown 36.4
2850 Male, age 76, both hemispheres 33.6
Periaquaductal grey, lateral
nTPM: 37.5
2053 Male, age 18, unknown 40.4
2140 Male, age 76, both hemispheres 36.7
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 37.7
2825 Male, age 18, unknown 42.2
2273 Male, age 74, both hemispheres 39.5
2407 Male, age 75, both hemispheres 39.5
2667 Female, age 75, unknown 39.4
1815 Male, age 53, unknown 38.0
2224 Female, age 72, unknown 37.6
2007 Male, age 72, unknown 36.4
1817 Female, age 42, unknown 35.9
1944 Female, age 72, unknown 35.6
2316 Male, age 76, right hemisphere 35.4
1816 Male, age 51, unknown 34.9
Red nucleus
nTPM: 42.2
1865 Male, age 51, unknown 46.2
1904 Male, age 53, unknown 45.6
2588 Male, age 74, left hemisphere 45.1
2769 Male, age 72, unknown 44.3
1821 Female, age 72, unknown 43.2
2227 Male, age 72, unknown 42.9
1954 Female, age 42, unknown 42.5
2823 Male, age 76, right hemisphere 41.5
2584 Male, age 75, left hemisphere 40.8
2503 Female, age 72, unknown 40.4
2785 Male, age 18, unknown 38.7
2725 Female, age 75, unknown 34.6
Substantia nigra
nTPM: 43.9
2590 Female, age 75, unknown 49.7
2583 Male, age 75, right hemisphere 46.4
2409 Female, age 72, unknown 46.1
1851 Male, age 51, unknown 45.5
1916 Female, age 42, unknown 45.1
2241 Male, age 72, unknown 44.7
1941 Male, age 53, unknown 42.6
2665 Male, age 74, both hemispheres 42.3
2699 Male, age 18, unknown 38.2
1889 Female, age 72, unknown 38.0
Superior colliculus
nTPM: 38.7
2664 Male, age 75, both hemispheres 44.5
1913 Female, age 42, unknown 42.2
2668 Female, age 75, unknown 40.5
2261 Male, age 18, unknown 38.9
2587 Male, age 74, left hemisphere 38.5
1995 Male, age 72, unknown 37.6
1796 Male, age 53, unknown 37.2
1839 Male, age 51, unknown 36.6
2087 Female, age 72, unknown 36.2
1895 Male, age 76, right hemisphere 35.4
Ventral tegmental area
nTPM: 44.0
2223 Female, age 72, unknown 49.8
2410 Female, age 72, unknown 44.9
1942 Male, age 51, unknown 44.3
2218 Male, age 76, both hemispheres 42.6
2021 Male, age 53, unknown 41.8
1915 Female, age 42, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.2
Samples: 139

Max nTPM: 26.9
Min nTPM: 9.7
Std nTPM: 2.9
Median nTPM: 16.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 24.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 23.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 22.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 21.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 21.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 21.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.9
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 20.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 20.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.2
FF:10158-103A5 76 years, female 60.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.0
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.6
Sample A Female 31.5
Sample B Female 24.6
Sample C Male 29.6
Sample D Male 26.4
Midbrain
nTPM: 29.4
Samples: 4

Max nTPM: 32.0
Min nTPM: 25.2
Sample A Female 30.8
Sample B Female 29.4
Sample C Male 32.0
Sample D Male 25.2
Periaqueductal gray
nTPM: 24.9
Samples: 3

Max nTPM: 27.8
Min nTPM: 22.9
Sample B Female 27.8
Sample C Male 23.9
Sample D Male 22.9
Superior colliculi
nTPM: 25.0
Samples: 4

Max nTPM: 29.5
Min nTPM: 18.4
Sample A Female 26.2
Sample B Female 18.4
Sample C Male 29.5
Sample D Male 25.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 48.4
Min nTPM: 44.3
Sample A Male 44.3
Sample B Male 46.9
Sample C Female 48.4
Sample D Female 48.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70218085 Antisense, RP_050519_02_G08, Mouse strain C57BL/6J (56 days, male) 5.4

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