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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDRG1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
26.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDRG1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
231
Samples
Sample
Description
TPM
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
32.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
30.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
27.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.3
351
Tumor
1.1
863
Tumor
1.1
695
Tumor
1.1
558
Normal
1.0
487
Tumor
1.0
573
Tumor
1.0
567
Tumor
0.9
671
Tumor
0.9
647
Tumor
0.9
967
Tumor
0.9
785
Tumor
0.9
473
Tumor
0.8
865
Tumor
0.8
483
Tumor
0.8
1021
Tumor
0.8
545
Tumor
0.8
481
Tumor
0.8
923
Tumor
0.7
147
Tumor
0.7
777
Tumor
0.7
663
Tumor
0.7
915
Tumor
0.7
131
Tumor
0.6
943
Tumor
0.6
285
Tumor
0.6
965
Tumor
0.6
983
Tumor
0.6
715
Tumor
0.6
661
Tumor
0.6
745
Tumor
0.5
517
Tumor
0.5
881
Tumor
0.5
211
Tumor
0.5
921
Tumor
0.5
368
Normal
0.5
535
Tumor
0.5
713
Tumor
0.4
697
Tumor
0.4
385
Tumor
0.4
957
Tumor
0.4
883
Tumor
0.4
431
Tumor
0.4
443
Tumor
0.4
537
Tumor
0.4
415
Tumor
0.4
851
Tumor
0.4
283
Tumor
0.4
913
Tumor
0.4
963
Tumor
0.4
327
Tumor
0.4
572
Normal
0.4
568
Normal
0.4
815
Tumor
0.4
721
Tumor
0.3
975
Tumor
0.3
685
Tumor
0.3
527
Tumor
0.3
384
Normal
0.3
911
Tumor
0.3
1041
Tumor
0.3
1043
Tumor
0.3
223
Tumor
0.3
755
Tumor
0.3
877
Tumor
0.3
355
Tumor
0.3
665
Tumor
0.3
341
Tumor
0.3
497
Tumor
0.3
461
Tumor
0.3
455
Tumor
0.3
724
Normal
0.3
861
Tumor
0.3
221
Tumor
0.3
563
Tumor
0.3
1015
Tumor
0.3
137
Tumor
0.3
873
Tumor
0.3
955
Tumor
0.2
1032
Normal
0.2
366
Normal
0.2
365
Tumor
0.2
1031
Tumor
0.2
953
Tumor
0.2
447
Tumor
0.2
981
Tumor
0.2
356
Normal
0.2
557
Tumor
0.2
478
Normal
0.2
925
Tumor
0.2
1022
Normal
0.2
353
Tumor
0.2
1046
Normal
0.2
1027
Tumor
0.2
451
Tumor
0.2
331
Tumor
0.2
311
Tumor
0.2
375
Tumor
0.2
494
Normal
0.2
536
Normal
0.2
1045
Tumor
0.2
171
Tumor
0.2
492
Normal
0.2
917
Tumor
0.2
916
Normal
0.2
857
Tumor
0.2
867
Tumor
0.2
227
Tumor
0.2
728
Normal
0.2
212
Normal
0.1
395
Tumor
0.1
463
Tumor
0.1
574
Normal
0.1
635
Tumor
0.1
482
Normal
0.1
1042
Normal
0.1
1014
Normal
0.1
493
Tumor
0.1
448
Normal
0.1
435
Tumor
0.1
617
Tumor
0.1
944
Normal
0.1
416
Normal
0.1
433
Tumor
0.1
364
Normal
0.1
954
Normal
0.1
472
Normal
0.1
125
Tumor
0.1
741
Tumor
0.1
411
Tumor
0.1
958
Normal
0.1
977
Tumor
0.1
224
Normal
0.1
737
Tumor
0.1
376
Normal
0.1
471
Tumor
0.1
488
Normal
0.1
297
Tumor
0.1
445
Tumor
0.1
964
Normal
0.1
393
Tumor
0.1
868
Normal
0.1
951
Tumor
0.1
1028
Normal
0.1
466
Normal
0.1
515
Tumor
0.1
484
Normal
0.0
477
Tumor
0.0
363
Tumor
0.0
187
Tumor
0.0
553
Tumor
0.0
978
Normal
0.0
135
Tumor
0.0
918
Normal
0.0
213
Tumor
0.0
145
Tumor
0.0
412
Normal
0.0
474
Normal
0.0
1025
Tumor
0.0
641
Tumor
0.0
817
Tumor
0.0
362
Normal
0.0
328
Normal
0.0
462
Normal
0.0
786
Normal
0.0
217
Tumor
0.0
498
Normal
0.0
367
Tumor
0.0
982
Normal
0.0
1044
Normal
0.0
127
Tumor
0.0
564
Normal
0.0
976
Normal
0.0
968
Normal
0.0
824
Normal
0.0
491
Tumor
0.0
956
Normal
0.0
513
Tumor
0.0
852
Normal
0.0
926
Normal
-0.1
698
Normal
-0.1
261
Tumor
-0.1
756
Normal
-0.1
528
Normal
-0.1
616
Normal
-0.1
1016
Normal
-0.1
813
Tumor
-0.1
912
Normal
-0.1
267
Tumor
-0.1
938
Normal
-0.1
723
Tumor
-0.1
862
Normal
-0.1
571
Tumor
-0.1
1026
Normal
-0.1
816
Normal
-0.1
456
Normal
-0.1
141
Tumor
-0.1
142
Normal
-0.1
361
Tumor
-0.1
937
Tumor
-0.1
984
Normal
-0.1
966
Normal
-0.1
743
Tumor
-0.1
858
Normal
-0.1
714
Normal
-0.1
716
Normal
-0.1
546
Normal
-0.1
866
Normal
-0.1
132
Normal
-0.1
924
Normal
-0.1
465
Tumor
-0.1
523
Tumor
-0.1
468
Normal
-0.1
534
Normal
-0.1
191
Tumor
-0.1
271
Tumor
-0.2
444
Normal
-0.2
814
Normal
-0.2
882
Normal
-0.2
914
Normal
-0.2
123
Tumor
-0.2
195
Tumor
-0.2
284
Normal
-0.2
686
Normal
-0.2
128
Normal
-0.2
516
Normal
-0.2
696
Normal
-0.2
884
Normal
-0.2
864
Normal
-0.2
627
Tumor
-0.2
628
Normal
-0.2
615
Tumor
-0.2
722
Normal
-0.2
383
Tumor
-0.2
746
Normal
-0.2
358
Normal
-0.2
738
Normal
-0.2
277
Tumor
-0.2
514
Normal
-0.2
231
Tumor
-0.2
952
Normal
-0.2
467
Tumor
-0.2
518
Normal
-0.2
352
Normal
-0.2
138
Normal
-0.2
464
Normal
-0.2
387
Tumor
-0.2
533
Tumor
-0.2
332
Normal
-0.2
314
Normal
-0.2
146
Normal
-0.2
878
Normal
-0.2
538
Normal
-0.3
636
Normal
-0.3
524
Normal
-0.3
778
Normal
-0.3
161
Tumor
-0.3
126
Normal
-0.3
185
Tumor
-0.3
228
Normal
-0.3
526
Normal
-0.3
136
Normal
-0.3
742
Normal
-0.3
298
Normal
-0.3
922
Normal
-0.3
354
Normal
-0.3
342
Normal
-0.3
192
Normal
-0.3
744
Normal
-0.3
818
Normal
-0.3
727
Tumor
-0.3
312
Normal
-0.3
874
Normal
-0.3
452
Normal
-0.3
618
Normal
-0.4
642
Normal
-0.4
188
Normal
-0.4
525
Tumor
-0.4
432
Normal
-0.4
257
Tumor
-0.4
672
Normal
-0.4
391
Tumor
-0.4
286
Normal
-0.4
436
Normal
-0.4
823
Tumor
-0.4
554
Normal
-0.4
648
Normal
-0.4
344
Normal
-0.4
446
Normal
-0.4
232
Normal
-0.4
664
Normal
-0.5
186
Normal
-0.5
172
Normal
-0.5
357
Tumor
-0.5
196
Normal
-0.5
434
Normal
-0.5
162
Normal
-0.5
278
Normal
-0.5
214
Normal
-0.5
148
Normal
-0.5
218
Normal
-0.5
268
Normal
-0.6
666
Normal
-0.6
262
Normal
-0.6
272
Normal
-0.6
662
Normal
-0.6
343
Tumor
-0.6
386
Normal
-0.7
113
Tumor
-0.7
258
Normal
-0.7
394
Normal
-0.7
222
Normal
-0.7
313
Tumor
-0.7
388
Normal
-0.8
392
Normal
-0.9
396
Normal
-0.9
111
Normal
-0.9
114
Normal
-0.9
112
Tumor
-1.0
124
Normal
-1.2
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
