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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
156.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
151.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
105.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
101.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
96.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
94.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
89.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
88.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
87.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
85.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
84.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
83.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
83.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
80.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
78.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
77.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
73.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
67.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
66.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
63.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
60.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
56.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
56.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
56.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
56.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
54.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
54.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
53.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
51.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
50.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
47.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
46.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
46.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
43.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
40.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
38.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
37.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
34.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
32.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
32.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
31.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
30.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
29.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
29.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
28.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
27.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
21.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIR is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.7
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
109.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
106.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
102.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
85.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
84.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
82.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
78.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
77.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
68.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
67.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
50.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
48.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
46.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
46.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
42.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
41.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
40.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
37.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
36.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
36.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
34.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
32.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
29.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
26.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
15.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.5
267
Tumor
1.4
1041
Tumor
1.4
913
Tumor
1.3
685
Tumor
1.3
1013
Tumor
1.3
477
Tumor
1.2
925
Tumor
1.1
535
Tumor
1.1
533
Tumor
1.1
724
Normal
1.0
741
Tumor
0.9
911
Tumor
0.9
1027
Tumor
0.9
663
Tumor
0.9
513
Tumor
0.8
493
Tumor
0.8
113
Tumor
0.8
161
Tumor
0.8
857
Tumor
0.8
473
Tumor
0.7
527
Tumor
0.7
135
Tumor
0.7
431
Tumor
0.7
861
Tumor
0.7
415
Tumor
0.7
451
Tumor
0.6
313
Tumor
0.6
427
Tumor
0.6
1021
Tumor
0.6
977
Tumor
0.6
873
Tumor
0.6
563
Tumor
0.6
487
Tumor
0.6
483
Tumor
0.5
327
Tumor
0.5
866
Normal
0.5
915
Tumor
0.5
387
Tumor
0.5
745
Tumor
0.5
537
Tumor
0.5
525
Tumor
0.4
145
Tumor
0.4
127
Tumor
0.4
1045
Tumor
0.4
923
Tumor
0.4
391
Tumor
0.4
981
Tumor
0.4
112
Tumor
0.4
353
Tumor
0.3
423
Tumor
0.3
435
Tumor
0.3
171
Tumor
0.3
867
Tumor
0.3
443
Tumor
0.3
231
Tumor
0.3
615
Tumor
0.3
617
Tumor
0.3
944
Normal
0.3
212
Normal
0.3
635
Tumor
0.3
515
Tumor
0.3
481
Tumor
0.3
567
Tumor
0.2
257
Tumor
0.2
413
Tumor
0.2
363
Tumor
0.2
1026
Normal
0.2
1015
Tumor
0.2
367
Tumor
0.2
864
Normal
0.2
573
Tumor
0.2
557
Tumor
0.2
461
Tumor
0.2
955
Tumor
0.2
361
Tumor
0.1
558
Normal
0.1
484
Normal
0.1
951
Tumor
0.1
137
Tumor
0.1
937
Tumor
0.1
777
Tumor
0.1
411
Tumor
0.1
488
Normal
0.1
756
Normal
0.1
284
Normal
0.1
494
Normal
0.1
571
Tumor
0.1
191
Tumor
0.1
514
Normal
0.1
914
Normal
0.1
978
Normal
0.1
375
Tumor
0.1
738
Normal
0.1
785
Tumor
0.1
123
Tumor
0.1
546
Normal
0.1
465
Tumor
0.1
436
Normal
0.1
918
Normal
0.1
883
Tumor
0.1
1046
Normal
0.1
128
Normal
0.1
922
Normal
0.0
647
Tumor
0.0
953
Tumor
0.0
564
Normal
0.0
474
Normal
0.0
616
Normal
0.0
462
Normal
0.0
714
Normal
0.0
1022
Normal
0.0
957
Tumor
0.0
698
Normal
0.0
721
Tumor
0.0
261
Tumor
0.0
823
Tumor
0.0
956
Normal
0.0
448
Normal
0.0
965
Tumor
0.0
388
Normal
0.0
213
Tumor
0.0
968
Normal
0.0
223
Tumor
0.0
262
Normal
0.0
482
Normal
0.0
148
Normal
0.0
723
Tumor
0.0
924
Normal
0.0
351
Tumor
0.0
1032
Normal
0.0
952
Normal
0.0
572
Normal
0.0
964
Normal
0.0
755
Tumor
0.0
297
Tumor
0.0
497
Tumor
-0.1
526
Normal
-0.1
286
Normal
-0.1
258
Normal
-0.1
858
Normal
-0.1
926
Normal
-0.1
958
Normal
-0.1
862
Normal
-0.1
1042
Normal
-0.1
534
Normal
-0.1
882
Normal
-0.1
554
Normal
-0.1
518
Normal
-0.1
1014
Normal
-0.1
954
Normal
-0.1
416
Normal
-0.1
432
Normal
-0.1
696
Normal
-0.1
232
Normal
-0.1
141
Tumor
-0.1
445
Tumor
-0.1
852
Normal
-0.1
422
Normal
-0.1
196
Normal
-0.1
468
Normal
-0.1
224
Normal
-0.1
746
Normal
-0.1
874
Normal
-0.1
824
Normal
-0.1
421
Tumor
-0.1
228
Normal
-0.1
642
Normal
-0.1
278
Normal
-0.1
383
Tumor
-0.1
478
Normal
-0.1
396
Normal
-0.1
362
Normal
-0.1
328
Normal
-0.1
1016
Normal
-0.1
356
Normal
-0.1
314
Normal
-0.1
1028
Normal
-0.1
272
Normal
-0.2
498
Normal
-0.2
364
Normal
-0.2
963
Tumor
-0.2
716
Normal
-0.2
884
Normal
-0.2
722
Normal
-0.2
976
Normal
-0.2
878
Normal
-0.2
185
Tumor
-0.2
222
Normal
-0.2
1044
Normal
-0.2
218
Normal
-0.2
384
Normal
-0.2
686
Normal
-0.2
424
Normal
-0.2
697
Tumor
-0.2
568
Normal
-0.2
147
Tumor
-0.2
538
Normal
-0.2
528
Normal
-0.2
132
Normal
-0.2
851
Tumor
-0.2
742
Normal
-0.2
664
Normal
-0.2
728
Normal
-0.2
868
Normal
-0.2
357
Tumor
-0.2
426
Normal
-0.2
162
Normal
-0.2
268
Normal
-0.2
142
Normal
-0.2
298
Normal
-0.2
916
Normal
-0.2
863
Tumor
-0.2
648
Normal
-0.2
982
Normal
-0.2
467
Tumor
-0.2
816
Normal
-0.2
472
Normal
-0.2
342
Normal
-0.2
433
Tumor
-0.2
456
Normal
-0.3
214
Normal
-0.3
354
Normal
-0.3
172
Normal
-0.3
376
Normal
-0.3
414
Normal
-0.3
778
Normal
-0.3
312
Normal
-0.3
187
Tumor
-0.3
662
Normal
-0.3
516
Normal
-0.3
412
Normal
-0.3
217
Tumor
-0.3
366
Normal
-0.3
124
Normal
-0.3
394
Normal
-0.3
984
Normal
-0.3
574
Normal
-0.3
221
Tumor
-0.3
464
Normal
-0.3
1031
Tumor
-0.3
466
Normal
-0.3
786
Normal
-0.3
536
Normal
-0.3
446
Normal
-0.3
524
Normal
-0.3
627
Tumor
-0.3
136
Normal
-0.3
818
Normal
-0.3
428
Normal
-0.3
471
Tumor
-0.3
452
Normal
-0.3
138
Normal
-0.3
938
Normal
-0.3
545
Tumor
-0.3
912
Normal
-0.3
966
Normal
-0.3
744
Normal
-0.3
352
Normal
-0.3
636
Normal
-0.4
392
Normal
-0.4
455
Tumor
-0.4
114
Normal
-0.4
444
Normal
-0.4
713
Tumor
-0.4
368
Normal
-0.4
188
Normal
-0.4
355
Tumor
-0.4
628
Normal
-0.4
283
Tumor
-0.4
492
Normal
-0.4
386
Normal
-0.4
358
Normal
-0.4
491
Tumor
-0.4
186
Normal
-0.4
126
Normal
-0.4
523
Tumor
-0.4
715
Tumor
-0.4
814
Normal
-0.4
111
Normal
-0.4
817
Tumor
-0.4
434
Normal
-0.4
332
Normal
-0.4
192
Normal
-0.4
227
Tumor
-0.4
666
Normal
-0.4
146
Normal
-0.4
665
Tumor
-0.4
195
Tumor
-0.5
343
Tumor
-0.5
395
Tumor
-0.5
881
Tumor
-0.5
618
Normal
-0.5
344
Normal
-0.5
553
Tumor
-0.5
1043
Tumor
-0.5
813
Tumor
-0.5
311
Tumor
-0.5
975
Tumor
-0.6
983
Tumor
-0.6
967
Tumor
-0.6
447
Tumor
-0.6
1025
Tumor
-0.6
211
Tumor
-0.6
425
Tumor
-0.6
943
Tumor
-0.6
393
Tumor
-0.7
365
Tumor
-0.7
131
Tumor
-0.7
672
Normal
-0.7
815
Tumor
-0.7
641
Tumor
-0.7
277
Tumor
-0.7
341
Tumor
-0.8
695
Tumor
-0.8
737
Tumor
-0.8
917
Tumor
-0.8
661
Tumor
-0.8
385
Tumor
-0.9
271
Tumor
-0.9
517
Tumor
-1.0
463
Tumor
-1.0
125
Tumor
-1.2
877
Tumor
-1.2
727
Tumor
-1.2
921
Tumor
-1.3
671
Tumor
-1.3
331
Tumor
-1.4
743
Tumor
-1.4
285
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
