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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:684.6 nTPM
GTEx:684.6 nTPM
FANTOM5:960.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018122Antibody HPA027478Antibody HPA028386Antibody CAB010337
Squamous epithelial cells Not detectedMediumNot detectedLow





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

684.6
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 684.6
Samples: 170

Max nTPM: 1242.2
Min nTPM: 453.6
Std nTPM: 137.2
Median nTPM: 655.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1242.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1103.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1065.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1017.6
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1011.5
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 985.9
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 983.4
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 962.2
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 930.3
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 911.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 909.9
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 906.2
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 897.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 893.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 878.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 873.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 873.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 870.2
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 860.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 859.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 853.8
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 843.3
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 843.2
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 839.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 829.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 821.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 819.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 809.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 806.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 805.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 802.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 802.2
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 797.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 796.2
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 790.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 786.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 785.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 781.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 778.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 776.7
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 774.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 773.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 768.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 764.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 758.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 755.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 754.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 752.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 745.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 745.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 744.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 744.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 741.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 735.6
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 735.4
GTEX-QCQG-1226-SM-48U23 50-59 years, female 732.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 728.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 727.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 722.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 721.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 714.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 713.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 711.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 711.4
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 709.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 706.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 705.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 703.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 700.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 695.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 690.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 687.2
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 684.0
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 679.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 673.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 672.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 669.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 667.8
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 667.7
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 663.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 661.8
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 661.0
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 660.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 658.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 657.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 653.9
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 652.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 651.5
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 648.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 647.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 646.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 645.3
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 643.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 643.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 642.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 639.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 639.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 638.7
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 638.4
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 638.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 632.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 626.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 625.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 623.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 622.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 621.1
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 616.9
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 616.0
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 614.8
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 614.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 613.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 611.2
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 609.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 606.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 603.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 602.3
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 602.2
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 602.2
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 599.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 598.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 596.0
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 592.5
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 591.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 591.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 589.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 587.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 583.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 581.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 581.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 580.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 579.5
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 579.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 576.4
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 576.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 574.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 574.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 573.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 570.8
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 564.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 564.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 558.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 554.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 554.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 548.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 547.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 545.8
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 544.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 543.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 541.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 537.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 535.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 535.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 534.2
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 532.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 525.2
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 519.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 516.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 514.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 512.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 509.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 507.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 504.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 502.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 499.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 494.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 487.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 485.9
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 476.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 467.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 453.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

960.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 960.8
FF:10204-103F6 68 years, female 960.8

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