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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:642.4 nTPM
GTEx:642.4 nTPM
FANTOM5:832.4 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

642.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 642.4
Samples: 105

Max nTPM: 1326.0
Min nTPM: 302.7
Std nTPM: 182.2
Median nTPM:
506_1 65 years, male 1326.0
452_1 88 years, female 1079.0
173_1 67 years, male 979.3
377_1 82 years, female 975.1
295_1 61 years, female 931.0
264_1 73 years, female 925.6
379_1 60 years, male 919.3
316_1 62 years, male 898.0
177_1 74 years, male 881.7
322_1 76 years, male 862.4
351_1 91 years, male 857.3
376_1 75 years, female 841.7
406_1 79 years, male 838.4
163_1 78 years, male 833.4
386_1 76 years, male 832.1
394_1 75 years, female 827.9
356_1 87 years, female 825.9
375_1 74 years, female 803.7
353_1 82 years, female 795.6
319_1 81 years, male 791.0
318_1 68 years, male 790.9
425_1 59 years, female 790.8
237_1 82 years, male 790.7
243_1 75 years, male 785.0
172_1 72 years, female 784.2
321_1 62 years, female 766.6
286_1 68 years, female 765.4
320_1 89 years, female 764.7
288_1 66 years, female 759.4
292_1 71 years, male 749.4
384_1 83 years, male 746.4
352_1 62 years, male 746.1
404_1 82 years, female 739.4
2_1 77 years, female 736.0
218_1 71 years, female 722.3
335_1 73 years, female 716.3
317_1 60 years, male 710.6
349_1 83 years, male 709.4
17_1 71 years, male 704.9
447_1 81 years, male 703.1
293_1 68 years, female 699.5
503_1 68 years, male 698.6
396_1 62 years, male 696.7
254_1 77 years, female 682.4
4_1 88 years, female 681.3
347_1 72 years, male 676.9
350_1 84 years, female 674.6
229_1 69 years, female 658.2
405_1 91 years, male 651.2
6_1 73 years, female 642.7
526_1 61 years, male 639.7
266_1 85 years, male 639.2
480_1 63 years, male 627.3
291_1 76 years, male 624.1
348_1 84 years, male 621.1
99_1 64 years, male 612.7
501_1 88 years, male 609.5
354_1 81 years, female 604.4
41_1 94 years, female 602.9
145_1 84 years, male 595.3
355_1 70 years, female 594.7
314_1 67 years, male 592.1
313_1 79 years, female 590.9
35_1 74 years, female 590.0
137_1 83 years, male 580.9
189_1 76 years, male 574.3
120_1 70 years, female 565.5
246_1 77 years, male 564.9
139_1 64 years, female 563.8
315_1 62 years, female 556.8
324_1 76 years, male 551.0
115_1 83 years, male 550.9
517_1 88 years, male 550.7
142_1 61 years, female 548.0
109_1 81 years, female 544.9
468_1 89 years, male 543.3
265_1 87 years, male 530.3
153_1 70 years, female 526.0
18_1 88 years, male 522.2
311_1 78 years, male 514.4
413_1 59 years, female 508.5
126_1 63 years, male 508.1
307_1 66 years, female 507.0
518_1 75 years, female 505.8
42_1 85 years, male 505.4
251_1 78 years, male 503.2
389_1 86 years, female 488.3
499_1 55 years, female 484.2
119_1 70 years, female 472.0
9_1 66 years, female 447.4
414_1 84 years, female 421.3
308_1 70 years, female 415.9
117_1 61 years, male 415.0
217_1 76 years, male 401.5
43_1 64 years, female 384.0
81_1 67 years, male 382.2
495_1 57 years, female 374.6
466_1 57 years, female 357.4
415_1 77 years, female 353.9
32_1 67 years, male 346.1
89_1 63 years, male 338.0
491_1 89 years, female 314.5
149_1 88 years, male 309.0
162_1 79 years, female 304.1
490_1 67 years, female 302.7
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

832.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 832.4
FF:10030-101E3 24-65 years, mixed 832.4

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