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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTRAF is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
61.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
193.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
186.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
161.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
157.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
148.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
146.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
139.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
123.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
114.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
111.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
110.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
109.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
106.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
104.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
102.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
100.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
98.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
96.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
96.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
95.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
94.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
92.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
92.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
91.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
90.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
89.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
88.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
88.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
87.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
87.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
87.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
86.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
86.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
86.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
85.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
85.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
84.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
84.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
83.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
83.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
82.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
82.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
81.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
81.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
80.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
80.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
79.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
79.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
78.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
78.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
77.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
77.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
77.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
76.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
76.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
76.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
76.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
75.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
75.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
75.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
75.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
75.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
75.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
74.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
74.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
74.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
74.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
74.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
73.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
73.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
73.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
72.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
72.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
71.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
71.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
70.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
70.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
70.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
69.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
69.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
69.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
69.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
69.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
68.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
68.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
68.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
68.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
67.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
67.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
66.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
66.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
66.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
66.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
66.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
66.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
66.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
65.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
65.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
65.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
65.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
64.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
64.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
64.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
64.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
64.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
64.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
64.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
64.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
64.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
64.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
63.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
63.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
63.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
63.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
62.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
62.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
62.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
62.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
62.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
62.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
62.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
62.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
61.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
61.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
61.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
60.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
60.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
60.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
60.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
59.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
59.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
59.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
59.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
59.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
59.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
58.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
58.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
58.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
57.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
57.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
57.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
57.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
57.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
57.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
57.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
57.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
56.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
56.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
56.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
56.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
56.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
56.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
56.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
56.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
55.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
55.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
55.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
55.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
55.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
55.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
54.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
54.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
54.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
54.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
54.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
54.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
54.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
53.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
53.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
53.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
53.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
53.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
53.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
52.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
52.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
52.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
51.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
51.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
51.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
51.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
50.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
50.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
50.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
50.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
50.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
49.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
49.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
49.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
49.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
48.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
48.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
48.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
48.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
48.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
47.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
47.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
47.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
46.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
46.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
45.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
45.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
45.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
45.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
45.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
45.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
45.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
45.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
45.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
44.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
44.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
44.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
44.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
44.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
44.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
44.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
43.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
43.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
43.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
42.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
42.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
42.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
42.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
42.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
42.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
41.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
40.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
40.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
39.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
37.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
35.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
35.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
30.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
527
Tumor
0.8
513
Tumor
0.6
395
Tumor
0.6
137
Tumor
0.6
135
Tumor
0.6
777
Tumor
0.6
515
Tumor
0.5
661
Tumor
0.5
695
Tumor
0.5
425
Tumor
0.5
533
Tumor
0.5
487
Tumor
0.5
635
Tumor
0.5
545
Tumor
0.4
443
Tumor
0.4
383
Tumor
0.4
113
Tumor
0.4
427
Tumor
0.4
357
Tumor
0.4
461
Tumor
0.4
983
Tumor
0.4
737
Tumor
0.4
257
Tumor
0.4
112
Tumor
0.3
815
Tumor
0.3
131
Tumor
0.3
967
Tumor
0.3
1027
Tumor
0.3
863
Tumor
0.3
387
Tumor
0.3
965
Tumor
0.3
1025
Tumor
0.3
467
Tumor
0.3
697
Tumor
0.3
421
Tumor
0.3
917
Tumor
0.3
213
Tumor
0.3
221
Tumor
0.3
557
Tumor
0.3
227
Tumor
0.3
431
Tumor
0.3
685
Tumor
0.3
353
Tumor
0.3
493
Tumor
0.3
724
Normal
0.3
313
Tumor
0.3
126
Normal
0.3
881
Tumor
0.3
375
Tumor
0.2
455
Tumor
0.2
185
Tumor
0.2
141
Tumor
0.2
161
Tumor
0.2
492
Normal
0.2
385
Tumor
0.2
497
Tumor
0.2
271
Tumor
0.2
745
Tumor
0.2
471
Tumor
0.2
195
Tumor
0.2
943
Tumor
0.2
975
Tumor
0.2
268
Normal
0.2
285
Tumor
0.2
477
Tumor
0.2
463
Tumor
0.2
627
Tumor
0.2
277
Tumor
0.2
955
Tumor
0.2
478
Normal
0.2
1015
Tumor
0.2
563
Tumor
0.2
413
Tumor
0.2
311
Tumor
0.2
523
Tumor
0.2
127
Tumor
0.2
267
Tumor
0.2
957
Tumor
0.2
671
Tumor
0.2
481
Tumor
0.2
331
Tumor
0.2
188
Normal
0.2
873
Tumor
0.2
1045
Tumor
0.2
114
Normal
0.2
211
Tumor
0.2
953
Tumor
0.2
865
Tumor
0.1
192
Normal
0.1
553
Tumor
0.1
384
Normal
0.1
355
Tumor
0.1
361
Tumor
0.1
537
Tumor
0.1
212
Normal
0.1
433
Tumor
0.1
538
Normal
0.1
672
Normal
0.1
785
Tumor
0.1
362
Normal
0.1
365
Tumor
0.1
411
Tumor
0.1
187
Tumor
0.1
571
Tumor
0.1
111
Normal
0.1
415
Tumor
0.1
312
Normal
0.1
125
Tumor
0.1
423
Tumor
0.1
447
Tumor
0.1
535
Tumor
0.1
283
Tumor
0.1
514
Normal
0.1
498
Normal
0.1
567
Tumor
0.1
1013
Tumor
0.1
232
Normal
0.1
615
Tumor
0.1
918
Normal
0.1
524
Normal
0.1
867
Tumor
0.1
124
Normal
0.1
434
Normal
0.1
473
Tumor
0.1
516
Normal
0.1
217
Tumor
0.1
696
Normal
0.1
925
Tumor
0.1
278
Normal
0.1
191
Tumor
0.1
713
Tumor
0.1
913
Tumor
0.1
172
Normal
0.1
314
Normal
0.1
138
Normal
0.1
147
Tumor
0.1
981
Tumor
0.1
743
Tumor
0.1
617
Tumor
0.1
937
Tumor
0.1
518
Normal
0.1
662
Normal
0.1
494
Normal
0.1
412
Normal
0.1
444
Normal
0.1
1031
Tumor
0.1
356
Normal
0.1
916
Normal
0.1
857
Tumor
0.1
445
Tumor
0.1
352
Normal
0.1
272
Normal
0.1
367
Tumor
0.1
663
Tumor
0.1
786
Normal
0.1
922
Normal
0.1
874
Normal
0.1
1021
Tumor
0.1
536
Normal
0.1
616
Normal
0.0
351
Tumor
0.0
262
Normal
0.0
284
Normal
0.0
128
Normal
0.0
223
Tumor
0.0
526
Normal
0.0
964
Normal
0.0
664
Normal
0.0
628
Normal
0.0
755
Tumor
0.0
328
Normal
0.0
416
Normal
0.0
818
Normal
0.0
136
Normal
0.0
727
Tumor
0.0
218
Normal
0.0
666
Normal
0.0
132
Normal
0.0
472
Normal
0.0
866
Normal
0.0
451
Tumor
0.0
258
Normal
0.0
814
Normal
0.0
228
Normal
0.0
462
Normal
0.0
956
Normal
0.0
464
Normal
0.0
214
Normal
0.0
488
Normal
0.0
148
Normal
0.0
363
Tumor
0.0
297
Tumor
0.0
564
Normal
0.0
436
Normal
0.0
636
Normal
0.0
468
Normal
0.0
482
Normal
0.0
884
Normal
0.0
558
Normal
0.0
723
Tumor
0.0
852
Normal
0.0
864
Normal
0.0
976
Normal
0.0
926
Normal
0.0
446
Normal
0.0
484
Normal
0.0
574
Normal
0.0
954
Normal
0.0
824
Normal
0.0
466
Normal
0.0
286
Normal
0.0
868
Normal
0.0
944
Normal
0.0
861
Tumor
0.0
358
Normal
0.0
915
Tumor
0.0
327
Tumor
0.0
858
Normal
0.0
465
Tumor
0.0
474
Normal
0.0
432
Normal
0.0
568
Normal
0.0
554
Normal
0.0
968
Normal
0.0
728
Normal
0.0
354
Normal
0.0
741
Tumor
0.0
924
Normal
0.0
145
Tumor
0.0
186
Normal
0.0
448
Normal
0.0
332
Normal
0.0
222
Normal
0.0
386
Normal
0.0
525
Tumor
0.0
665
Tumor
0.0
528
Normal
0.0
364
Normal
0.0
738
Normal
0.0
1042
Normal
0.0
298
Normal
0.0
196
Normal
0.0
224
Normal
0.0
877
Tumor
0.0
123
Tumor
0.0
414
Normal
0.0
647
Tumor
0.0
642
Normal
0.0
958
Normal
0.0
778
Normal
0.0
1046
Normal
0.0
422
Normal
0.0
483
Tumor
0.0
146
Normal
0.0
393
Tumor
0.0
162
Normal
0.0
982
Normal
0.0
231
Tumor
-0.1
715
Tumor
-0.1
534
Normal
-0.1
756
Normal
-0.1
452
Normal
-0.1
648
Normal
-0.1
424
Normal
-0.1
984
Normal
-0.1
376
Normal
-0.1
366
Normal
-0.1
1044
Normal
-0.1
714
Normal
-0.1
882
Normal
-0.1
426
Normal
-0.1
344
Normal
-0.1
914
Normal
-0.1
698
Normal
-0.1
546
Normal
-0.1
342
Normal
-0.1
923
Tumor
-0.1
722
Normal
-0.1
883
Tumor
-0.1
742
Normal
-0.1
1016
Normal
-0.1
142
Normal
-0.1
851
Tumor
-0.1
817
Tumor
-0.1
618
Normal
-0.1
744
Normal
-0.1
261
Tumor
-0.1
1014
Normal
-0.1
641
Tumor
-0.1
368
Normal
-0.1
952
Normal
-0.1
686
Normal
-0.1
966
Normal
-0.1
716
Normal
-0.1
977
Tumor
-0.1
456
Normal
-0.1
1041
Tumor
-0.1
428
Normal
-0.1
862
Normal
-0.1
978
Normal
-0.1
912
Normal
-0.1
491
Tumor
-0.1
963
Tumor
-0.1
823
Tumor
-0.1
878
Normal
-0.1
816
Normal
-0.1
1026
Normal
-0.1
396
Normal
-0.1
721
Tumor
-0.1
435
Tumor
-0.1
938
Normal
-0.1
1028
Normal
-0.1
746
Normal
-0.1
921
Tumor
-0.1
394
Normal
-0.1
392
Normal
-0.2
171
Tumor
-0.2
341
Tumor
-0.2
813
Tumor
-0.2
573
Tumor
-0.2
391
Tumor
-0.2
343
Tumor
-0.2
572
Normal
-0.2
911
Tumor
-0.2
388
Normal
-0.2
1043
Tumor
-0.2
517
Tumor
-0.3
951
Tumor
-0.3
1032
Normal
-0.3
1022
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
