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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UIMC1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UIMC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.3
351
Tumor
1.2
965
Tumor
1.1
921
Tumor
0.9
161
Tumor
0.9
865
Tumor
0.9
331
Tumor
0.9
123
Tumor
0.9
385
Tumor
0.8
383
Tumor
0.7
473
Tumor
0.7
923
Tumor
0.7
221
Tumor
0.7
483
Tumor
0.7
883
Tumor
0.7
425
Tumor
0.7
1013
Tumor
0.6
641
Tumor
0.6
227
Tumor
0.6
743
Tumor
0.6
391
Tumor
0.6
1031
Tumor
0.6
877
Tumor
0.6
617
Tumor
0.6
413
Tumor
0.6
387
Tumor
0.6
737
Tumor
0.6
497
Tumor
0.6
471
Tumor
0.6
487
Tumor
0.6
977
Tumor
0.5
341
Tumor
0.5
913
Tumor
0.5
881
Tumor
0.5
491
Tumor
0.5
647
Tumor
0.5
395
Tumor
0.5
447
Tumor
0.5
937
Tumor
0.5
211
Tumor
0.5
112
Tumor
0.4
313
Tumor
0.4
967
Tumor
0.4
131
Tumor
0.4
715
Tumor
0.4
285
Tumor
0.4
665
Tumor
0.4
721
Tumor
0.4
297
Tumor
0.4
498
Normal
0.4
192
Normal
0.4
171
Tumor
0.4
671
Tumor
0.3
663
Tumor
0.3
411
Tumor
0.3
355
Tumor
0.3
191
Tumor
0.3
975
Tumor
0.3
484
Normal
0.3
823
Tumor
0.3
861
Tumor
0.3
213
Tumor
0.3
963
Tumor
0.3
983
Tumor
0.3
433
Tumor
0.3
467
Tumor
0.3
493
Tumor
0.3
727
Tumor
0.3
716
Normal
0.2
672
Normal
0.2
1025
Tumor
0.2
724
Normal
0.2
375
Tumor
0.2
713
Tumor
0.2
444
Normal
0.2
635
Tumor
0.2
492
Normal
0.2
185
Tumor
0.2
661
Tumor
0.2
415
Tumor
0.2
384
Normal
0.2
686
Normal
0.2
353
Tumor
0.2
435
Tumor
0.2
567
Tumor
0.2
817
Tumor
0.1
363
Tumor
0.1
685
Tumor
0.1
465
Tumor
0.1
916
Normal
0.1
666
Normal
0.1
494
Normal
0.1
217
Tumor
0.1
536
Normal
0.1
664
Normal
0.1
311
Tumor
0.1
277
Tumor
0.1
924
Normal
0.1
364
Normal
0.1
545
Tumor
0.1
431
Tumor
0.1
517
Tumor
0.1
343
Tumor
0.1
223
Tumor
0.1
478
Normal
0.1
863
Tumor
0.1
488
Normal
0.1
283
Tumor
0.1
538
Normal
0.1
862
Normal
0.1
125
Tumor
0.1
527
Tumor
0.1
361
Tumor
0.1
884
Normal
0.1
427
Tumor
0.1
628
Normal
0.1
461
Tumor
0.0
535
Tumor
0.0
648
Normal
0.0
815
Tumor
0.0
423
Tumor
0.0
1041
Tumor
0.0
953
Tumor
0.0
1021
Tumor
0.0
261
Tumor
0.0
187
Tumor
0.0
416
Normal
0.0
982
Normal
0.0
563
Tumor
0.0
746
Normal
0.0
741
Tumor
0.0
393
Tumor
0.0
912
Normal
0.0
925
Tumor
0.0
386
Normal
0.0
917
Tumor
0.0
984
Normal
0.0
1045
Tumor
0.0
956
Normal
0.0
755
Tumor
0.0
147
Tumor
0.0
412
Normal
0.0
662
Normal
0.0
141
Tumor
0.0
1014
Normal
0.0
228
Normal
0.0
434
Normal
0.0
573
Tumor
0.0
978
Normal
0.0
477
Tumor
0.0
1043
Tumor
0.0
284
Normal
0.0
127
Tumor
0.0
968
Normal
0.0
1046
Normal
0.0
188
Normal
0.0
627
Tumor
0.0
356
Normal
-0.1
1044
Normal
-0.1
878
Normal
-0.1
546
Normal
-0.1
443
Tumor
-0.1
922
Normal
-0.1
695
Tumor
-0.1
1016
Normal
-0.1
472
Normal
-0.1
135
Tumor
-0.1
271
Tumor
-0.1
523
Tumor
-0.1
212
Normal
-0.1
534
Normal
-0.1
557
Tumor
-0.1
257
Tumor
-0.1
943
Tumor
-0.1
952
Normal
-0.1
554
Normal
-0.1
286
Normal
-0.1
882
Normal
-0.1
362
Normal
-0.1
938
Normal
-0.1
514
Normal
-0.1
481
Tumor
-0.1
445
Tumor
-0.1
915
Tumor
-0.1
976
Normal
-0.1
785
Tumor
-0.1
553
Tumor
-0.1
615
Tumor
-0.1
914
Normal
-0.1
1028
Normal
-0.1
392
Normal
-0.1
698
Normal
-0.1
918
Normal
-0.1
955
Tumor
-0.1
1022
Normal
-0.1
696
Normal
-0.1
1042
Normal
-0.1
642
Normal
-0.1
396
Normal
-0.1
1032
Normal
-0.1
964
Normal
-0.1
744
Normal
-0.1
451
Tumor
-0.1
424
Normal
-0.1
851
Tumor
-0.1
455
Tumor
-0.1
537
Tumor
-0.1
428
Normal
-0.1
515
Tumor
-0.2
366
Normal
-0.2
944
Normal
-0.2
722
Normal
-0.2
867
Tumor
-0.2
137
Tumor
-0.2
474
Normal
-0.2
312
Normal
-0.2
966
Normal
-0.2
462
Normal
-0.2
124
Normal
-0.2
816
Normal
-0.2
448
Normal
-0.2
145
Tumor
-0.2
926
Normal
-0.2
528
Normal
-0.2
874
Normal
-0.2
328
Normal
-0.2
426
Normal
-0.2
714
Normal
-0.2
365
Tumor
-0.2
224
Normal
-0.2
957
Tumor
-0.2
268
Normal
-0.2
388
Normal
-0.2
368
Normal
-0.2
195
Tumor
-0.2
852
Normal
-0.2
873
Tumor
-0.2
868
Normal
-0.2
524
Normal
-0.2
745
Tumor
-0.2
446
Normal
-0.2
618
Normal
-0.2
958
Normal
-0.2
376
Normal
-0.2
616
Normal
-0.2
278
Normal
-0.2
814
Normal
-0.3
954
Normal
-0.3
342
Normal
-0.3
518
Normal
-0.3
533
Tumor
-0.3
456
Normal
-0.3
231
Tumor
-0.3
126
Normal
-0.3
981
Tumor
-0.3
1026
Normal
-0.3
777
Tumor
-0.3
298
Normal
-0.3
468
Normal
-0.3
911
Tumor
-0.3
571
Tumor
-0.3
463
Tumor
-0.3
146
Normal
-0.3
858
Normal
-0.3
636
Normal
-0.3
421
Tumor
-0.3
818
Normal
-0.3
394
Normal
-0.3
738
Normal
-0.3
414
Normal
-0.3
572
Normal
-0.3
148
Normal
-0.3
857
Tumor
-0.3
218
Normal
-0.3
432
Normal
-0.3
327
Tumor
-0.3
864
Normal
-0.3
742
Normal
-0.3
262
Normal
-0.3
272
Normal
-0.3
114
Normal
-0.3
778
Normal
-0.3
357
Tumor
-0.3
436
Normal
-0.3
352
Normal
-0.3
344
Normal
-0.3
866
Normal
-0.3
222
Normal
-0.4
258
Normal
-0.4
138
Normal
-0.4
142
Normal
-0.4
464
Normal
-0.4
697
Tumor
-0.4
756
Normal
-0.4
113
Tumor
-0.4
558
Normal
-0.4
813
Tumor
-0.4
525
Tumor
-0.4
332
Normal
-0.4
422
Normal
-0.4
568
Normal
-0.4
824
Normal
-0.4
482
Normal
-0.4
574
Normal
-0.4
214
Normal
-0.4
111
Normal
-0.4
186
Normal
-0.4
196
Normal
-0.4
526
Normal
-0.4
1015
Tumor
-0.5
172
Normal
-0.5
728
Normal
-0.5
354
Normal
-0.5
232
Normal
-0.5
466
Normal
-0.5
786
Normal
-0.5
314
Normal
-0.5
162
Normal
-0.5
267
Tumor
-0.5
136
Normal
-0.5
132
Normal
-0.5
516
Normal
-0.6
367
Tumor
-0.6
723
Tumor
-0.6
128
Normal
-0.6
564
Normal
-0.6
358
Normal
-0.7
452
Normal
-0.7
1027
Tumor
-0.8
513
Tumor
-3.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
