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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
107.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
492.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
284.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
267.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
266.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
252.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
236.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
229.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
227.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
217.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
211.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
209.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
205.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
204.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
203.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
197.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
193.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
193.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
189.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
185.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
184.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
180.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
179.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
177.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
176.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
173.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
172.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
172.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
171.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
169.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
165.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
164.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
163.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
163.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
162.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
162.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
160.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
159.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
159.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
158.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
158.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
157.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
157.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
156.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
155.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
155.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
155.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
155.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
155.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
148.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
148.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
148.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
147.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
146.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
145.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
145.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
143.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
143.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
143.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
143.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
143.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
142.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
141.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
141.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
140.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
138.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
137.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
136.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
136.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
136.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
136.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
135.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
134.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
133.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
133.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
132.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
132.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
132.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
132.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
132.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
132.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
131.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
129.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
129.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
128.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
128.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
128.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
127.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
127.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
126.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
126.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
126.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
126.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
126.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
125.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
125.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
125.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
125.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
124.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
123.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
123.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
123.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
122.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
121.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
121.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
120.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
120.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
120.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
119.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
118.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
117.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
117.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
116.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
116.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
115.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
115.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
115.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
115.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
114.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
114.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
114.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
113.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
113.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
112.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
112.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
112.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
111.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
111.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
111.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
110.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
110.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
110.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
110.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
110.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
110.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
110.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
109.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
109.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
109.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
109.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
109.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
109.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
109.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
108.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
108.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
108.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
107.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
107.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
107.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
107.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
107.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
106.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
106.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
106.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
105.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
105.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
105.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
105.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
104.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
104.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
103.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
103.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
103.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
103.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
102.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
102.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
102.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
102.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
102.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
102.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
100.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
100.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
100.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
100.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
99.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
99.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
99.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
98.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
98.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
98.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
98.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
98.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
98.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
97.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
97.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
97.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
96.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
96.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
96.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
96.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
95.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
95.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
95.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
94.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
94.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
93.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
93.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
92.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
92.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
92.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
92.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
92.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
92.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
92.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
91.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
91.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
91.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
91.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
90.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
90.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
90.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
90.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
90.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
90.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
89.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
89.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
89.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
89.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
89.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
89.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
89.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
88.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
88.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
88.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
88.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
87.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
87.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
87.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
87.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
86.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
86.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
85.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
84.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
84.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
84.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
84.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
83.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
83.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
83.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
83.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
83.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
82.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
81.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
81.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
81.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
81.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
81.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
81.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
81.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
80.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
80.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
80.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
80.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
80.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
80.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
80.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
80.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
80.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
79.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
79.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
79.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
79.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
78.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
78.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
77.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
77.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
77.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
77.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
76.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
76.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
76.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
76.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
76.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
75.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
75.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
75.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
75.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
75.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
75.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
74.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
74.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
74.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
74.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
73.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
73.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
73.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
73.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
72.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
72.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
72.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
71.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
71.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
71.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
70.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
70.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
70.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
70.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
69.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
69.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
69.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
67.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
67.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
67.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
67.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
67.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
67.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
67.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
66.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
65.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
65.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
64.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
63.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
63.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
63.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
63.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
62.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
62.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
62.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
62.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
62.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
62.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
61.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
61.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
61.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
60.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
60.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
59.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
59.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
59.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
59.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
59.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
59.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
58.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
58.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
58.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
58.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
57.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
56.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
55.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
47.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
44.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
43.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
95.9
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
356.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
264.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
262.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
235.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
225.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
218.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
216.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
203.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
198.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
190.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
188.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
178.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
178.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
177.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
176.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
173.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
171.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
167.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
166.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
161.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
156.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
151.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
150.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
149.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
149.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
148.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
147.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
146.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
144.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
143.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
143.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
141.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
137.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
137.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
137.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
136.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
133.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
131.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
131.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
130.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
129.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
128.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
126.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
125.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
125.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
124.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
120.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
118.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
118.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
115.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
115.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
114.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
112.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
112.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
112.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
109.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
109.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
109.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
108.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
107.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
107.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
106.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
105.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
104.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
104.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
103.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
103.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
103.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
102.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
102.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
101.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
100.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
100.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
99.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
99.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
99.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
99.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
99.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
98.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
97.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
97.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
96.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
96.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
96.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
95.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
94.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
94.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
94.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
94.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
94.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
94.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
93.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
93.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
93.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
93.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
93.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
92.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
91.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
91.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
91.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
90.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
90.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
89.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
88.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
88.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
88.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
86.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
86.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
86.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
85.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
85.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
85.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
85.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
84.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
83.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
82.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
82.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
82.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
82.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
81.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
80.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
80.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
80.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
79.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
79.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
78.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
78.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
77.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
77.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
76.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
76.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
76.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
75.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
75.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
75.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
75.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
74.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
74.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
74.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
73.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
73.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
73.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
73.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
73.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
72.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
72.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
72.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
72.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
71.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
70.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
70.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
69.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
69.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
69.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
68.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
68.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
68.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
68.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
68.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
68.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
67.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
67.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
66.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
66.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
66.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
65.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
65.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
64.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
64.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
64.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
64.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
64.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
63.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
63.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
62.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
62.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
62.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
62.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
61.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
61.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
61.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
60.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
59.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
59.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
58.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
57.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
57.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
57.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
57.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
55.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
55.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
54.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
54.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
53.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
53.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
53.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
53.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
52.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
51.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
50.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
50.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
50.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
47.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
45.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
44.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
0.5
1027
Tumor
0.4
257
Tumor
0.4
755
Tumor
0.4
327
Tumor
0.4
955
Tumor
0.3
741
Tumor
0.3
533
Tumor
0.3
981
Tumor
0.3
925
Tumor
0.3
1026
Normal
0.3
525
Tumor
0.3
953
Tumor
0.3
756
Normal
0.3
1022
Normal
0.3
353
Tumor
0.3
513
Tumor
0.3
484
Normal
0.3
724
Normal
0.2
713
Tumor
0.2
714
Normal
0.2
746
Normal
0.2
1021
Tumor
0.2
745
Tumor
0.2
924
Normal
0.2
723
Tumor
0.2
567
Tumor
0.2
514
Normal
0.2
147
Tumor
0.2
857
Tumor
0.2
728
Normal
0.2
1043
Tumor
0.2
616
Normal
0.2
862
Normal
0.2
448
Normal
0.2
815
Tumor
0.2
944
Normal
0.2
738
Normal
0.2
926
Normal
0.2
436
Normal
0.2
558
Normal
0.2
494
Normal
0.2
952
Normal
0.2
786
Normal
0.2
515
Tumor
0.2
824
Normal
0.2
223
Tumor
0.2
978
Normal
0.2
696
Normal
0.2
466
Normal
0.2
1032
Normal
0.1
864
Normal
0.1
922
Normal
0.1
951
Tumor
0.1
911
Tumor
0.1
742
Normal
0.1
1044
Normal
0.1
937
Tumor
0.1
328
Normal
0.1
1046
Normal
0.1
351
Tumor
0.1
957
Tumor
0.1
416
Normal
0.1
868
Normal
0.1
527
Tumor
0.1
125
Tumor
0.1
866
Normal
0.1
482
Normal
0.1
356
Normal
0.1
912
Normal
0.1
873
Tumor
0.1
698
Normal
0.1
956
Normal
0.1
212
Normal
0.1
1015
Tumor
0.1
488
Normal
0.1
863
Tumor
0.1
661
Tumor
0.1
518
Normal
0.1
918
Normal
0.1
455
Tumor
0.1
1016
Normal
0.1
1025
Tumor
0.1
743
Tumor
0.1
858
Normal
0.1
884
Normal
0.1
477
Tumor
0.1
727
Tumor
0.1
412
Normal
0.1
982
Normal
0.1
697
Tumor
0.1
778
Normal
0.1
685
Tumor
0.1
534
Normal
0.1
487
Tumor
0.1
472
Normal
0.1
113
Tumor
0.1
966
Normal
0.1
851
Tumor
0.1
852
Normal
0.1
228
Normal
0.1
938
Normal
0.1
648
Normal
0.1
528
Normal
0.1
865
Tumor
0.1
1028
Normal
0.1
537
Tumor
0.1
435
Tumor
0.1
617
Tumor
0.1
432
Normal
0.1
564
Normal
0.1
663
Tumor
0.1
517
Tumor
0.1
286
Normal
0.1
313
Tumor
0.1
967
Tumor
0.1
964
Normal
0.1
722
Normal
0.1
958
Normal
0.1
861
Tumor
0.1
414
Normal
0.1
816
Normal
0.1
364
Normal
0.1
221
Tumor
0.1
916
Normal
0.1
716
Normal
0.1
227
Tumor
0.1
132
Normal
0.1
358
Normal
0.1
1042
Normal
0.1
923
Tumor
0.1
1031
Tumor
0.1
721
Tumor
0.1
572
Normal
0.1
415
Tumor
0.1
568
Normal
0.1
1014
Normal
0.1
1045
Tumor
0.1
123
Tumor
0.1
261
Tumor
0.1
526
Normal
0.1
452
Normal
0.1
983
Tumor
0.1
284
Normal
0.1
867
Tumor
0.1
262
Normal
0.1
882
Normal
0.1
362
Normal
0.1
557
Tumor
0.1
546
Normal
0.1
272
Normal
0.1
818
Normal
0.1
462
Normal
0.1
456
Normal
0.1
474
Normal
0.1
571
Tumor
0.1
136
Normal
0.1
573
Tumor
0.1
128
Normal
0.1
214
Normal
0.0
914
Normal
0.0
968
Normal
0.0
426
Normal
0.0
361
Tumor
0.0
664
Normal
0.0
141
Tumor
0.0
563
Tumor
0.0
965
Tumor
0.0
258
Normal
0.0
363
Tumor
0.0
391
Tumor
0.0
686
Normal
0.0
516
Normal
0.0
666
Normal
0.0
111
Normal
0.0
913
Tumor
0.0
451
Tumor
0.0
671
Tumor
0.0
695
Tumor
0.0
473
Tumor
0.0
628
Normal
0.0
976
Normal
0.0
424
Normal
0.0
278
Normal
0.0
647
Tumor
0.0
421
Tumor
0.0
172
Normal
0.0
471
Tumor
0.0
314
Normal
0.0
481
Tumor
0.0
142
Normal
0.0
341
Tumor
0.0
422
Normal
0.0
915
Tumor
0.0
387
Tumor
0.0
285
Tumor
0.0
222
Normal
0.0
785
Tumor
0.0
196
Normal
0.0
878
Normal
0.0
877
Tumor
0.0
464
Normal
0.0
428
Normal
0.0
963
Tumor
0.0
162
Normal
0.0
411
Tumor
0.0
662
Normal
0.0
465
Tumor
0.0
114
Normal
0.0
218
Normal
0.0
874
Normal
0.0
188
Normal
0.0
376
Normal
0.0
665
Tumor
0.0
267
Tumor
0.0
554
Normal
0.0
224
Normal
0.0
423
Tumor
0.0
478
Normal
0.0
148
Normal
0.0
368
Normal
0.0
342
Normal
0.0
491
Tumor
0.0
232
Normal
0.0
312
Normal
0.0
883
Tumor
0.0
145
Tumor
0.0
357
Tumor
0.0
468
Normal
0.0
954
Normal
0.0
283
Tumor
0.0
715
Tumor
0.0
298
Normal
0.0
492
Normal
0.0
1013
Tumor
0.0
445
Tumor
0.0
365
Tumor
0.0
943
Tumor
0.0
425
Tumor
0.0
311
Tumor
0.0
186
Normal
0.0
367
Tumor
0.0
984
Normal
-0.1
137
Tumor
-0.1
131
Tumor
-0.1
523
Tumor
-0.1
446
Normal
-0.1
431
Tumor
-0.1
354
Normal
-0.1
427
Tumor
-0.1
524
Normal
-0.1
618
Normal
-0.1
277
Tumor
-0.1
627
Tumor
-0.1
536
Normal
-0.1
413
Tumor
-0.1
127
Tumor
-0.1
443
Tumor
-0.1
434
Normal
-0.1
355
Tumor
-0.1
146
Normal
-0.1
112
Tumor
-0.1
366
Normal
-0.1
171
Tumor
-0.1
535
Tumor
-0.1
977
Tumor
-0.1
817
Tumor
-0.1
138
Normal
-0.1
187
Tumor
-0.1
813
Tumor
-0.1
1041
Tumor
-0.1
384
Normal
-0.1
271
Tumor
-0.1
395
Tumor
-0.1
461
Tumor
-0.1
498
Normal
-0.1
642
Normal
-0.1
497
Tumor
-0.1
297
Tumor
-0.1
463
Tumor
-0.1
493
Tumor
-0.1
195
Tumor
-0.1
386
Normal
-0.1
344
Normal
-0.1
881
Tumor
-0.1
615
Tumor
-0.1
392
Normal
-0.1
394
Normal
-0.1
352
Normal
-0.1
447
Tumor
-0.1
433
Tumor
-0.1
635
Tumor
-0.1
126
Normal
-0.1
211
Tumor
-0.1
483
Tumor
-0.1
553
Tumor
-0.1
231
Tumor
-0.1
191
Tumor
-0.1
217
Tumor
-0.1
213
Tumor
-0.1
185
Tumor
-0.1
375
Tumor
-0.1
921
Tumor
-0.1
343
Tumor
-0.1
383
Tumor
-0.1
268
Normal
-0.1
574
Normal
-0.2
388
Normal
-0.2
636
Normal
-0.2
135
Tumor
-0.2
823
Tumor
-0.2
467
Tumor
-0.2
396
Normal
-0.2
975
Tumor
-0.2
332
Normal
-0.2
393
Tumor
-0.2
124
Normal
-0.2
917
Tumor
-0.2
192
Normal
-0.2
814
Normal
-0.2
641
Tumor
-0.2
744
Normal
-0.2
538
Normal
-0.2
161
Tumor
-0.2
385
Tumor
-0.2
444
Normal
-0.2
672
Normal
-0.2
737
Tumor
-0.3
331
Tumor
-0.3
545
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
