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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGS1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGS1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
286
Normal
1.9
627
Tumor
1.5
533
Tumor
1.3
957
Tumor
1.2
147
Tumor
1.2
863
Tumor
1.1
618
Normal
1.1
981
Tumor
1.1
695
Tumor
1.1
423
Tumor
1.1
642
Normal
1.0
491
Tumor
0.9
615
Tumor
0.9
635
Tumor
0.9
1027
Tumor
0.9
465
Tumor
0.9
435
Tumor
0.8
777
Tumor
0.8
411
Tumor
0.8
745
Tumor
0.8
628
Normal
0.8
636
Normal
0.8
1013
Tumor
0.8
741
Tumor
0.8
257
Tumor
0.7
351
Tumor
0.7
965
Tumor
0.7
882
Normal
0.7
341
Tumor
0.7
231
Tumor
0.7
433
Tumor
0.6
477
Tumor
0.6
224
Normal
0.6
911
Tumor
0.6
452
Normal
0.6
534
Normal
0.6
977
Tumor
0.6
191
Tumor
0.6
258
Normal
0.5
685
Tumor
0.5
171
Tumor
0.5
553
Tumor
0.5
192
Normal
0.5
456
Normal
0.5
228
Normal
0.5
487
Tumor
0.5
616
Normal
0.5
742
Normal
0.4
513
Tumor
0.4
912
Normal
0.4
913
Tumor
0.4
262
Normal
0.4
268
Normal
0.4
865
Tumor
0.4
365
Tumor
0.4
267
Tumor
0.4
196
Normal
0.4
571
Tumor
0.4
232
Normal
0.4
723
Tumor
0.4
367
Tumor
0.4
353
Tumor
0.4
332
Normal
0.4
861
Tumor
0.4
468
Normal
0.4
361
Tumor
0.4
851
Tumor
0.4
537
Tumor
0.3
1041
Tumor
0.3
953
Tumor
0.3
464
Normal
0.3
515
Tumor
0.3
738
Normal
0.3
873
Tumor
0.3
546
Normal
0.3
641
Tumor
0.3
187
Tumor
0.3
573
Tumor
0.3
554
Normal
0.3
744
Normal
0.3
214
Normal
0.3
884
Normal
0.3
785
Tumor
0.3
328
Normal
0.3
567
Tumor
0.3
483
Tumor
0.3
1015
Tumor
0.3
424
Normal
0.2
923
Tumor
0.2
271
Tumor
0.2
878
Normal
0.2
527
Tumor
0.2
272
Normal
0.2
617
Tumor
0.2
314
Normal
0.2
421
Tumor
0.2
375
Tumor
0.2
867
Tumor
0.2
786
Normal
0.2
466
Normal
0.2
428
Normal
0.2
983
Tumor
0.2
727
Tumor
0.2
813
Tumor
0.2
755
Tumor
0.2
297
Tumor
0.2
473
Tumor
0.2
217
Tumor
0.2
356
Normal
0.2
363
Tumor
0.2
451
Tumor
0.1
446
Normal
0.1
815
Tumor
0.1
195
Tumor
0.1
665
Tumor
0.1
444
Normal
0.1
358
Normal
0.1
212
Normal
0.1
311
Tumor
0.1
557
Tumor
0.1
921
Tumor
0.1
666
Normal
0.1
938
Normal
0.1
728
Normal
0.1
218
Normal
0.1
222
Normal
0.1
497
Tumor
0.1
877
Tumor
0.1
426
Normal
0.1
526
Normal
0.1
967
Tumor
0.1
963
Tumor
0.1
914
Normal
0.1
261
Tumor
0.1
868
Normal
0.1
915
Tumor
0.1
343
Tumor
0.1
447
Tumor
0.1
498
Normal
0.1
354
Normal
0.1
327
Tumor
0.1
814
Normal
0.1
161
Tumor
0.1
313
Tumor
0.1
342
Normal
0.1
223
Tumor
0.1
467
Tumor
0.1
881
Tumor
0.1
648
Normal
0.1
344
Normal
0.1
385
Tumor
0.1
331
Tumor
0.1
538
Normal
0.1
978
Normal
0.1
414
Normal
0.1
535
Tumor
0.1
434
Normal
0.1
494
Normal
0.1
422
Normal
0.1
148
Normal
0.1
357
Tumor
0.1
387
Tumor
0.0
213
Tumor
0.0
312
Normal
0.0
364
Normal
0.0
278
Normal
0.0
517
Tumor
0.0
188
Normal
0.0
436
Normal
0.0
162
Normal
0.0
864
Normal
0.0
1044
Normal
0.0
492
Normal
0.0
662
Normal
0.0
671
Tumor
0.0
432
Normal
0.0
818
Normal
0.0
756
Normal
0.0
277
Tumor
0.0
857
Tumor
0.0
425
Tumor
0.0
1016
Normal
0.0
663
Tumor
0.0
568
Normal
0.0
1032
Normal
0.0
391
Tumor
0.0
298
Normal
0.0
925
Tumor
0.0
664
Normal
0.0
563
Tumor
0.0
172
Normal
0.0
954
Normal
0.0
488
Normal
0.0
574
Normal
0.0
858
Normal
0.0
514
Normal
0.0
528
Normal
0.0
1046
Normal
0.0
944
Normal
0.0
724
Normal
0.0
416
Normal
0.0
186
Normal
0.0
926
Normal
0.0
866
Normal
0.0
564
Normal
0.0
937
Tumor
0.0
956
Normal
-0.1
355
Tumor
-0.1
778
Normal
-0.1
716
Normal
-0.1
672
Normal
-0.1
715
Tumor
-0.1
394
Normal
-0.1
982
Normal
-0.1
964
Normal
-0.1
1043
Tumor
-0.1
714
Normal
-0.1
388
Normal
-0.1
984
Normal
-0.1
572
Normal
-0.1
484
Normal
-0.1
883
Tumor
-0.1
463
Tumor
-0.1
415
Tumor
-0.1
221
Tumor
-0.1
713
Tumor
-0.1
146
Normal
-0.1
558
Normal
-0.1
852
Normal
-0.1
525
Tumor
-0.1
427
Tumor
-0.1
393
Tumor
-0.1
686
Normal
-0.1
1045
Tumor
-0.1
696
Normal
-0.1
518
Normal
-0.1
137
Tumor
-0.1
141
Tumor
-0.1
185
Tumor
-0.1
386
Normal
-0.1
368
Normal
-0.1
376
Normal
-0.1
443
Tumor
-0.1
916
Normal
-0.1
396
Normal
-0.1
743
Tumor
-0.1
445
Tumor
-0.1
824
Normal
-0.1
352
Normal
-0.1
392
Normal
-0.1
647
Tumor
-0.2
138
Normal
-0.2
412
Normal
-0.2
284
Normal
-0.2
746
Normal
-0.2
431
Tumor
-0.2
1014
Normal
-0.2
958
Normal
-0.2
722
Normal
-0.2
1031
Tumor
-0.2
145
Tumor
-0.2
968
Normal
-0.2
448
Normal
-0.2
924
Normal
-0.2
874
Normal
-0.2
413
Tumor
-0.2
976
Normal
-0.2
384
Normal
-0.2
455
Tumor
-0.2
1028
Normal
-0.2
493
Tumor
-0.2
366
Normal
-0.2
966
Normal
-0.2
462
Normal
-0.2
142
Normal
-0.2
816
Normal
-0.2
922
Normal
-0.2
523
Tumor
-0.2
955
Tumor
-0.2
383
Tumor
-0.2
721
Tumor
-0.2
136
Normal
-0.2
516
Normal
-0.2
1042
Normal
-0.2
478
Normal
-0.2
951
Tumor
-0.3
524
Normal
-0.3
1026
Normal
-0.3
862
Normal
-0.3
1021
Tumor
-0.3
545
Tumor
-0.3
817
Tumor
-0.3
481
Tumor
-0.3
975
Tumor
-0.3
661
Tumor
-0.3
472
Normal
-0.4
482
Normal
-0.4
362
Normal
-0.4
227
Tumor
-0.4
1022
Normal
-0.4
135
Tumor
-0.4
952
Normal
-0.4
132
Normal
-0.4
461
Tumor
-0.4
474
Normal
-0.4
918
Normal
-0.4
131
Tumor
-0.4
211
Tumor
-0.5
737
Tumor
-0.5
395
Tumor
-0.5
943
Tumor
-0.5
285
Tumor
-0.5
536
Normal
-0.5
697
Tumor
-0.5
823
Tumor
-0.6
471
Tumor
-0.6
917
Tumor
-0.6
283
Tumor
-0.8
1025
Tumor
-0.9
698
Normal
-0.9
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
