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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATXN7L3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
61.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
53.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
46.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
35.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
13.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATXN7L3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
42.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
1.3
385
Tumor
1.3
817
Tumor
1.1
131
Tumor
1.1
743
Tumor
1.1
1031
Tumor
1.0
545
Tumor
0.9
1025
Tumor
0.9
937
Tumor
0.8
727
Tumor
0.8
533
Tumor
0.8
537
Tumor
0.7
813
Tumor
0.7
1021
Tumor
0.7
865
Tumor
0.6
395
Tumor
0.6
553
Tumor
0.6
923
Tumor
0.6
1027
Tumor
0.6
387
Tumor
0.6
814
Normal
0.6
943
Tumor
0.6
331
Tumor
0.6
297
Tumor
0.5
861
Tumor
0.5
921
Tumor
0.5
851
Tumor
0.5
967
Tumor
0.5
917
Tumor
0.4
815
Tumor
0.4
737
Tumor
0.4
277
Tumor
0.4
953
Tumor
0.4
391
Tumor
0.4
386
Normal
0.4
311
Tumor
0.4
388
Normal
0.3
396
Normal
0.3
744
Normal
0.3
738
Normal
0.3
755
Tumor
0.2
965
Tumor
0.2
393
Tumor
0.2
925
Tumor
0.2
746
Normal
0.2
741
Tumor
0.2
171
Tumor
0.2
963
Tumor
0.1
955
Tumor
0.1
863
Tumor
0.1
823
Tumor
0.1
1041
Tumor
0.1
147
Tumor
0.1
394
Normal
0.1
867
Tumor
0.1
786
Normal
0.1
944
Normal
0.1
975
Tumor
0.1
956
Normal
0.1
135
Tumor
0.1
873
Tumor
0.1
728
Normal
0.1
141
Tumor
0.1
957
Tumor
0.1
392
Normal
0.1
742
Normal
0.1
313
Tumor
0.0
777
Tumor
0.0
968
Normal
0.0
723
Tumor
0.0
952
Normal
0.0
954
Normal
0.0
185
Tumor
0.0
778
Normal
0.0
187
Tumor
0.0
756
Normal
0.0
938
Normal
0.0
161
Tumor
0.0
915
Tumor
0.0
857
Tumor
0.0
964
Normal
0.0
916
Normal
0.0
1042
Normal
-0.1
824
Normal
-0.1
137
Tumor
-0.1
918
Normal
-0.1
976
Normal
-0.1
852
Normal
-0.1
966
Normal
-0.1
958
Normal
-0.1
922
Normal
-0.1
534
Normal
-0.1
724
Normal
-0.2
142
Normal
-0.2
528
Normal
-0.2
926
Normal
-0.2
1028
Normal
-0.2
818
Normal
-0.2
546
Normal
-0.2
1032
Normal
-0.2
745
Tumor
-0.2
538
Normal
-0.2
527
Tumor
-0.2
858
Normal
-0.2
554
Normal
-0.2
862
Normal
-0.2
1022
Normal
-0.2
864
Normal
-0.3
866
Normal
-0.3
145
Tumor
-0.3
1026
Normal
-0.3
874
Normal
-0.3
278
Normal
-0.3
785
Tumor
-0.3
816
Normal
-0.3
298
Normal
-0.3
188
Normal
-0.3
868
Normal
-0.3
146
Normal
-0.3
148
Normal
-0.3
186
Normal
-0.4
162
Normal
-0.4
924
Normal
-0.4
136
Normal
-0.4
132
Normal
-0.4
332
Normal
-0.4
172
Normal
-0.4
312
Normal
-0.5
138
Normal
-0.5
314
Normal
-0.5
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
