We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAX is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
72.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
377.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
268.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
218.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
217.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
200.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
199.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
198.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
193.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
176.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
175.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
173.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
170.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
169.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
166.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
163.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
159.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
158.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
152.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
149.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
149.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
145.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
145.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
135.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
135.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
132.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
132.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
129.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
129.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
126.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
126.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
123.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
123.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
122.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
122.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
122.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
121.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
120.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
120.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
120.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
119.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
119.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
118.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
116.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
116.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
115.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
114.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
114.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
113.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
113.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
112.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
111.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
111.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
111.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
111.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
111.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
110.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
110.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
108.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
108.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
107.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
104.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
104.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
103.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
103.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
103.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
102.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
102.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
101.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
101.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
101.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
100.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
100.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
100.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
100.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
99.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
98.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
98.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
95.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
95.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
95.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
94.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
93.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
93.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
93.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
92.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
92.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
91.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
91.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
89.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
88.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
88.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
88.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
87.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
87.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
85.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
85.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
85.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
85.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
85.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
84.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
84.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
83.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
83.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
83.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
82.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
82.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
81.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
80.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
80.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
80.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
80.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
79.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
79.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
79.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
79.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
79.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
78.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
78.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
77.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
77.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
77.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
76.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
76.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
76.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
76.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
75.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
75.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
75.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
74.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
74.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
74.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
74.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
74.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
74.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
74.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
72.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
72.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
71.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
71.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
70.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
70.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
69.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
68.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
68.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
68.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
67.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
67.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
66.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
66.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
66.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
66.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
66.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
65.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
65.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
65.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
65.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
64.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
64.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
63.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
63.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
62.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
62.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
62.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
62.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
62.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
61.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
61.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
61.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
60.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
60.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
60.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
60.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
59.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
59.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
58.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
58.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
58.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
58.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
58.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
57.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
57.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
57.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
56.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
56.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
56.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
56.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
56.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
56.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
56.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
55.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
54.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
54.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
54.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
54.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
53.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
52.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
52.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
52.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
51.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
50.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
49.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
49.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
49.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
49.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
49.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
47.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
46.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
46.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
46.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
46.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
45.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
45.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
45.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
44.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
44.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
43.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
43.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
43.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
42.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
42.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
41.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
41.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
41.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
41.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
41.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
40.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
39.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
37.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
37.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
37.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
35.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
34.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
33.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
32.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
30.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
29.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
28.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BAX is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.5
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
214.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
184.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
161.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
161.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
143.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
140.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
127.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
122.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
113.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
104.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
104.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
97.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
90.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
85.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
81.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
79.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
79.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
78.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
76.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
74.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
73.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
72.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
71.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
68.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
67.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
67.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
65.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
64.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
64.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
64.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
63.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
62.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
62.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
61.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
59.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
59.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
58.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
57.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
57.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
57.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
56.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
56.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
55.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
55.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
54.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
54.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
54.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
54.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
54.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
53.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
52.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
52.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
51.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
51.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
51.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
51.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
51.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
50.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
49.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
47.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
46.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
46.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
46.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
45.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
45.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
45.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
44.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
43.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
43.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
43.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
42.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
40.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
40.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
39.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
39.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
38.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
38.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
37.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
36.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
32.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
32.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
30.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
24.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
20.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
18.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.2
285
Tumor
1.2
125
Tumor
0.9
567
Tumor
0.7
545
Tumor
0.7
523
Tumor
0.7
661
Tumor
0.6
283
Tumor
0.6
851
Tumor
0.6
671
Tumor
0.6
413
Tumor
0.5
478
Normal
0.5
917
Tumor
0.5
113
Tumor
0.5
617
Tumor
0.5
433
Tumor
0.5
881
Tumor
0.5
261
Tumor
0.4
271
Tumor
0.4
641
Tumor
0.4
967
Tumor
0.4
297
Tumor
0.4
147
Tumor
0.4
451
Tumor
0.4
497
Tumor
0.4
975
Tumor
0.4
467
Tumor
0.4
311
Tumor
0.4
447
Tumor
0.4
873
Tumor
0.4
737
Tumor
0.4
863
Tumor
0.3
221
Tumor
0.3
131
Tumor
0.3
492
Normal
0.3
444
Normal
0.3
877
Tumor
0.3
112
Tumor
0.3
491
Tumor
0.3
727
Tumor
0.3
814
Normal
0.3
635
Tumor
0.3
463
Tumor
0.3
471
Tumor
0.2
384
Normal
0.2
817
Tumor
0.2
268
Normal
0.2
313
Tumor
0.2
558
Normal
0.2
257
Tumor
0.2
224
Normal
0.2
516
Normal
0.2
713
Tumor
0.2
524
Normal
0.2
262
Normal
0.2
327
Tumor
0.2
911
Tumor
0.2
517
Tumor
0.2
525
Tumor
0.2
421
Tumor
0.2
434
Normal
0.2
724
Normal
0.2
916
Normal
0.2
813
Tumor
0.2
391
Tumor
0.2
481
Tumor
0.2
213
Tumor
0.2
431
Tumor
0.2
362
Normal
0.2
188
Normal
0.2
498
Normal
0.2
385
Tumor
0.2
422
Normal
0.2
1043
Tumor
0.2
1027
Tumor
0.1
354
Normal
0.1
161
Tumor
0.1
557
Tumor
0.1
663
Tumor
0.1
852
Normal
0.1
424
Normal
0.1
494
Normal
0.1
386
Normal
0.1
192
Normal
0.1
272
Normal
0.1
212
Normal
0.1
284
Normal
0.1
445
Tumor
0.1
958
Normal
0.1
468
Normal
0.1
416
Normal
0.1
126
Normal
0.1
976
Normal
0.1
921
Tumor
0.1
277
Tumor
0.1
368
Normal
0.1
228
Normal
0.1
965
Tumor
0.1
865
Tumor
0.1
331
Tumor
0.1
146
Normal
0.1
393
Tumor
0.1
857
Tumor
0.1
231
Tumor
0.1
968
Normal
0.1
141
Tumor
0.1
366
Normal
0.1
864
Normal
0.1
353
Tumor
0.1
217
Tumor
0.1
957
Tumor
0.1
538
Normal
0.1
943
Tumor
0.1
414
Normal
0.1
728
Normal
0.1
978
Normal
0.1
328
Normal
0.1
341
Tumor
0.1
223
Tumor
0.1
785
Tumor
0.1
536
Normal
0.0
211
Tumor
0.0
915
Tumor
0.0
1044
Normal
0.0
628
Normal
0.0
343
Tumor
0.0
392
Normal
0.0
1013
Tumor
0.0
383
Tumor
0.0
395
Tumor
0.0
815
Tumor
0.0
984
Normal
0.0
738
Normal
0.0
356
Normal
0.0
755
Tumor
0.0
364
Normal
0.0
912
Normal
0.0
344
Normal
0.0
983
Tumor
0.0
455
Tumor
0.0
474
Normal
0.0
483
Tumor
0.0
966
Normal
0.0
138
Normal
0.0
466
Normal
0.0
214
Normal
0.0
461
Tumor
0.0
1042
Normal
0.0
514
Normal
0.0
528
Normal
0.0
537
Tumor
0.0
868
Normal
0.0
1031
Tumor
0.0
185
Tumor
0.0
743
Tumor
0.0
218
Normal
0.0
964
Normal
0.0
423
Tumor
0.0
662
Normal
0.0
136
Normal
0.0
723
Tumor
0.0
145
Tumor
0.0
435
Tumor
0.0
477
Tumor
0.0
858
Normal
0.0
387
Tumor
0.0
452
Normal
0.0
1028
Normal
0.0
953
Tumor
0.0
721
Tumor
0.0
564
Normal
0.0
818
Normal
0.0
1016
Normal
0.0
352
Normal
0.0
672
Normal
0.0
874
Normal
-0.1
473
Tumor
-0.1
462
Normal
-0.1
124
Normal
-0.1
665
Tumor
-0.1
816
Normal
-0.1
1032
Normal
-0.1
777
Tumor
-0.1
963
Tumor
-0.1
778
Normal
-0.1
187
Tumor
-0.1
513
Tumor
-0.1
191
Tumor
-0.1
312
Normal
-0.1
722
Normal
-0.1
142
Normal
-0.1
956
Normal
-0.1
563
Tumor
-0.1
195
Tumor
-0.1
977
Tumor
-0.1
357
Tumor
-0.1
918
Normal
-0.1
1025
Tumor
-0.1
1015
Tumor
-0.1
745
Tumor
-0.1
914
Normal
-0.1
867
Tumor
-0.1
365
Tumor
-0.1
367
Tumor
-0.1
465
Tumor
-0.1
883
Tumor
-0.1
981
Tumor
-0.1
1046
Normal
-0.1
884
Normal
-0.1
123
Tumor
-0.1
186
Normal
-0.1
426
Normal
-0.1
742
Normal
-0.1
573
Tumor
-0.1
924
Normal
-0.1
493
Tumor
-0.1
351
Tumor
-0.1
1026
Normal
-0.1
394
Normal
-0.1
286
Normal
-0.1
553
Tumor
-0.1
432
Normal
-0.1
574
Normal
-0.1
527
Tumor
-0.1
955
Tumor
-0.2
456
Normal
-0.2
448
Normal
-0.2
515
Tumor
-0.2
298
Normal
-0.2
162
Normal
-0.2
258
Normal
-0.2
861
Tumor
-0.2
415
Tumor
-0.2
375
Tumor
-0.2
358
Normal
-0.2
923
Tumor
-0.2
952
Normal
-0.2
132
Normal
-0.2
172
Normal
-0.2
376
Normal
-0.2
647
Tumor
-0.2
472
Normal
-0.2
396
Normal
-0.2
1022
Normal
-0.2
926
Normal
-0.2
518
Normal
-0.2
786
Normal
-0.2
388
Normal
-0.2
278
Normal
-0.2
428
Normal
-0.2
363
Tumor
-0.2
114
Normal
-0.2
137
Tumor
-0.2
128
Normal
-0.2
446
Normal
-0.2
824
Normal
-0.2
696
Normal
-0.2
616
Normal
-0.2
715
Tumor
-0.2
232
Normal
-0.2
1014
Normal
-0.2
411
Tumor
-0.2
866
Normal
-0.2
756
Normal
-0.2
698
Normal
-0.2
572
Normal
-0.2
716
Normal
-0.2
571
Tumor
-0.2
546
Normal
-0.2
355
Tumor
-0.2
1045
Tumor
-0.2
944
Normal
-0.2
642
Normal
-0.2
913
Tumor
-0.3
1021
Tumor
-0.3
314
Normal
-0.3
954
Normal
-0.3
686
Normal
-0.3
482
Normal
-0.3
412
Normal
-0.3
361
Tumor
-0.3
1041
Tumor
-0.3
484
Normal
-0.3
488
Normal
-0.3
227
Tumor
-0.3
332
Normal
-0.3
568
Normal
-0.3
882
Normal
-0.3
111
Normal
-0.3
148
Normal
-0.3
937
Tumor
-0.3
982
Normal
-0.3
618
Normal
-0.3
823
Tumor
-0.3
135
Tumor
-0.3
746
Normal
-0.3
267
Tumor
-0.3
922
Normal
-0.3
526
Normal
-0.3
196
Normal
-0.3
664
Normal
-0.3
464
Normal
-0.3
171
Tumor
-0.3
697
Tumor
-0.3
951
Tumor
-0.3
127
Tumor
-0.3
554
Normal
-0.3
666
Normal
-0.4
636
Normal
-0.4
535
Tumor
-0.4
222
Normal
-0.4
862
Normal
-0.4
695
Tumor
-0.4
938
Normal
-0.4
534
Normal
-0.4
427
Tumor
-0.4
744
Normal
-0.4
615
Tumor
-0.4
436
Normal
-0.4
648
Normal
-0.4
443
Tumor
-0.5
342
Normal
-0.5
714
Normal
-0.5
878
Normal
-0.5
741
Tumor
-0.5
925
Tumor
-0.6
685
Tumor
-0.6
627
Tumor
-0.6
533
Tumor
-0.7
487
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
